Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL4A4P53420 AC239868.2-201ENST00000564237 4527 ntBASIC4.82□□□□□ -1.64
COL4A4P53420 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL4A4P53420 MIR921-201ENST00000401133 56 ntBASIC4.82□□□□□ -1.64
COL4A4P53420 MIR1271-201ENST00000408537 86 ntBASIC4.82□□□□□ -1.64
COL4A4P53420 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.82□□□□□ -1.64
COL4A4P53420 CYCSP10-201ENST00000417973 294 ntBASIC4.82□□□□□ -1.64
COL4A4P53420 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.82□□□□□ -1.64
COL4A4P53420 AL353748.1-201ENST00000440753 474 ntBASIC4.82□□□□□ -1.64
COL4A4P53420 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.82□□□□□ -1.64
COL4A4P53420 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.82□□□□□ -1.64
COL4A4P53420 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.82□□□□□ -1.64
COL4A4P53420 AGGF1P6-201ENST00000569213 976 ntBASIC4.82□□□□□ -1.64
COL4A4P53420 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC4.82□□□□□ -1.64
COL4A4P53420 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.82□□□□□ -1.64
COL4A4P53420 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL4A4P53420 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
COL4A4P53420 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.82□□□□□ -1.64
COL4A4P53420 EIF2AP4-201ENST00000424793 1781 ntBASIC4.82□□□□□ -1.64
COL4A4P53420 AC018628.1-201ENST00000624147 3819 ntBASIC4.82□□□□□ -1.64
COL4A4P53420 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.82□□□□□ -1.64
COL4A4P53420 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL4A4P53420 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL4A4P53420 DMD-205ENST00000359836 7339 ntTSL 5 BASIC4.81□□□□□ -1.64
COL4A4P53420 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC4.81□□□□□ -1.64
COL4A4P53420 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
COL4A4P53420 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL4A4P53420 LINC00622-201ENST00000562811 1570 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
COL4A4P53420 MAPK10-349ENST00000641767 3661 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 SNORA71.3-201ENST00000362582 128 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 RNU1-83P-201ENST00000363426 164 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 AL161909.1-201ENST00000397390 712 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.81□□□□□ -1.64
COL4A4P53420 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.81□□□□□ -1.64
COL4A4P53420 RPL36AP10-201ENST00000421785 322 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC4.81□□□□□ -1.64
COL4A4P53420 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.81□□□□□ -1.64
COL4A4P53420 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC4.81□□□□□ -1.64
COL4A4P53420 VN1R105P-201ENST00000486595 910 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 AC138938.1-201ENST00000515431 782 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.81□□□□□ -1.64
COL4A4P53420 AP003730.1-201ENST00000524605 285 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.81□□□□□ -1.64
COL4A4P53420 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.81□□□□□ -1.64
COL4A4P53420 MIR4472-2-201ENST00000582069 67 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 RN7SL435P-201ENST00000584418 282 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 AC113403.1-201ENST00000604910 193 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 AC010201.1-201ENST00000605051 540 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 AC015871.5-202ENST00000623252 701 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 AP003400.2-201ENST00000624036 666 ntBASIC4.81□□□□□ -1.64
COL4A4P53420 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL4A4P53420 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.81□□□□□ -1.64
COL4A4P53420 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL4A4P53420 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL4A4P53420 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.81□□□□□ -1.64
COL4A4P53420 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL4A4P53420 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL4A4P53420 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.8□□□□□ -1.64
COL4A4P53420 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
COL4A4P53420 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL4A4P53420 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A4P53420 SNORA63.1-201ENST00000362493 131 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL4A4P53420 MT-RNR1-201ENST00000389680 954 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 ATP5F1P3-201ENST00000397213 657 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 PEX12P1-201ENST00000400284 1048 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AL592291.1-201ENST00000403830 352 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.8□□□□□ -1.64
COL4A4P53420 RN7SKP33-201ENST00000410942 340 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.8□□□□□ -1.64
COL4A4P53420 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A4P53420 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A4P53420 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC4.8□□□□□ -1.64
COL4A4P53420 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC4.8□□□□□ -1.64
COL4A4P53420 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A4P53420 RNA5SP249-201ENST00000516127 99 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A4P53420 AP001804.2-201ENST00000533932 910 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A4P53420 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A4P53420 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.8□□□□□ -1.64
COL4A4P53420 PSMB7P1-201ENST00000556349 514 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.8□□□□□ -1.64
COL4A4P53420 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A4P53420 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
COL4A4P53420 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL4A4P53420 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.8□□□□□ -1.64
COL4A4P53420 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL4A4P53420 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL4A4P53420 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
COL4A4P53420 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL4A4P53420 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL4A4P53420 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
COL4A4P53420 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL4A4P53420 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL4A4P53420 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
COL4A4P53420 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL4A4P53420 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL4A4P53420 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms