Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.96
SHROOM4Q9ULL8 AC084783.1-201ENST00000565846 910 ntBASIC9.02□□□□□ -0.96
SHROOM4Q9ULL8 PRELID3BP3-201ENST00000584963 545 ntBASIC9.02□□□□□ -0.96
SHROOM4Q9ULL8 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC9.02□□□□□ -0.96
SHROOM4Q9ULL8 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC9.02□□□□□ -0.96
SHROOM4Q9ULL8 AC018695.5-201ENST00000605872 315 ntBASIC9.02□□□□□ -0.96
SHROOM4Q9ULL8 AC012467.1-201ENST00000607740 256 ntBASIC9.02□□□□□ -0.96
SHROOM4Q9ULL8 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
SHROOM4Q9ULL8 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
SHROOM4Q9ULL8 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC9.02□□□□□ -0.97
SHROOM4Q9ULL8 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC9.02□□□□□ -0.97
SHROOM4Q9ULL8 OR4C10P-201ENST00000434991 931 ntBASIC9.02□□□□□ -0.97
SHROOM4Q9ULL8 RRM2P4-201ENST00000441721 562 ntBASIC9.02□□□□□ -0.97
SHROOM4Q9ULL8 HSFY6P-201ENST00000445573 403 ntBASIC9.02□□□□□ -0.97
SHROOM4Q9ULL8 AC079168.2-201ENST00000453977 416 ntBASIC9.02□□□□□ -0.97
SHROOM4Q9ULL8 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC9.02□□□□□ -0.97
SHROOM4Q9ULL8 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC9.02□□□□□ -0.97
SHROOM4Q9ULL8 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC9.02□□□□□ -0.97
SHROOM4Q9ULL8 RNA5SP196-201ENST00000625967 102 ntBASIC9.02□□□□□ -0.97
SHROOM4Q9ULL8 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC9.02□□□□□ -0.97
SHROOM4Q9ULL8 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 OR51H2P-202ENST00000641424 3046 ntBASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 OR13C3-201ENST00000374781 1108 ntBASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 RNA5SP317-201ENST00000410176 116 ntBASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 RNA5SP311-201ENST00000411290 116 ntBASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 RPL36AP41-201ENST00000493820 306 ntBASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 RNU1-6P-201ENST00000516290 144 ntBASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 RNA5SP315-201ENST00000516340 116 ntBASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 RNA5SP312-201ENST00000517068 116 ntBASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
SHROOM4Q9ULL8 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 TEX41-203ENST00000420472 765 ntTSL 3 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 AC022336.1-201ENST00000475510 337 ntBASIC9□□□□□ -0.97
SHROOM4Q9ULL8 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 CARD16-203ENST00000525374 503 ntTSL 3 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 MIR4420-201ENST00000583944 77 ntBASIC9□□□□□ -0.97
SHROOM4Q9ULL8 AL133370.2-201ENST00000619934 439 ntBASIC9□□□□□ -0.97
SHROOM4Q9ULL8 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC9□□□□□ -0.97
SHROOM4Q9ULL8 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 TRIM51GP-201ENST00000534741 1350 ntBASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 LINC00993-201ENST00000420453 540 ntBASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 PHBP16-201ENST00000446318 950 ntBASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 AC105918.1-201ENST00000474399 838 ntBASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 AL591034.3-201ENST00000605511 685 ntBASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 BX322635.1-201ENST00000605804 496 ntBASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 AC023043.4-201ENST00000612081 449 ntBASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 AL139254.3-201ENST00000641097 674 ntBASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC8.99□□□□□ -0.97
SHROOM4Q9ULL8 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
SHROOM4Q9ULL8 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
SHROOM4Q9ULL8 AC003985.2-201ENST00000562268 1669 ntBASIC8.98□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms