Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AP000766.1-201ENST00000561746 4140 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 TCP11X1-202ENST00000622971 1372 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 UEVLD-205ENST00000396197 4156 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 Y_RNA.144-201ENST00000363521 113 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 SNORA63C-201ENST00000364578 129 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 RN7SKP269-201ENST00000365545 319 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 SNORA4.3-201ENST00000365564 137 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 RNA5SP176-201ENST00000390956 110 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 THEM7P-201ENST00000419556 672 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AC010881.1-201ENST00000433830 235 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 RN7SL870P-201ENST00000460111 296 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 MRPS17P3-201ENST00000465453 385 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 PABPC1P3-201ENST00000469174 459 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 RPL37P23-201ENST00000492641 294 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AC111194.1-201ENST00000509711 422 ntTSL 3 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 TMEM248P1-201ENST00000510579 951 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AC005699.1-203ENST00000515286 688 ntTSL 3 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 RN7SKP13-201ENST00000515933 244 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 Y_RNA.691-201ENST00000516611 103 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AC008429.2-201ENST00000523057 864 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 MIR4437-201ENST00000581331 60 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 MAGOH2P-202ENST00000584384 429 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 BBIP1P1-201ENST00000602999 279 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AC104237.2-201ENST00000612456 443 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 OXSM-209ENST00000626005 309 ntTSL 3 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 PHKB-201ENST00000299167 5464 ntTSL 5 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 ARPP21-207ENST00000417925 3086 ntTSL 2 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 THAP12P7-201ENST00000520248 2290 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 AC005034.3-201ENST00000604845 1747 ntBASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 PPP6R3-206ENST00000524904 4292 ntAPPRIS ALT1 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 FTO-222ENST00000637969 2889 ntTSL 5 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 CDK15-201ENST00000260967 1635 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIMD1Q9UGP4 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 PKP4-AS1-201ENST00000342892 4067 ntTSL 2 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 MAPK10-272ENST00000641110 2724 ntAPPRIS P2 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 RNA5SP152-201ENST00000365184 110 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 SNORA32.2-201ENST00000384049 122 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AC008280.1-201ENST00000418851 412 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AC234781.4-201ENST00000419384 244 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 UQCRBP1-201ENST00000421129 336 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 RGS17P1-201ENST00000423358 553 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 GPR143P-201ENST00000434155 205 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AC119618.1-201ENST00000434191 222 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AC024082.2-201ENST00000434771 238 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 MTND3P2-201ENST00000438452 342 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 HIGD1AP16-201ENST00000450986 258 ntBASIC7.48□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms