Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC009032.1-201ENST00000617574 431 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC006840.1-201ENST00000623069 542 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC011815.3-201ENST00000624194 473 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC019080.5-201ENST00000624891 757 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 VPS35P1-201ENST00000563400 1518 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC097461.1-201ENST00000568928 2821 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 UGT2B26P-201ENST00000508672 1613 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 RNA5SP505-201ENST00000364748 108 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 MIR421-201ENST00000365696 85 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 AL589655.1-201ENST00000405398 482 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 OR2AH1P-201ENST00000425717 928 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 AC093716.1-201ENST00000435923 377 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 Z99127.2-201ENST00000441426 334 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 AC012512.1-201ENST00000446594 718 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 AC090142.1-201ENST00000465776 462 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 RN7SL354P-201ENST00000469282 294 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 RPS23P1-201ENST00000491662 432 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 ACTR6P1-201ENST00000514311 1104 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 RNU6-362P-201ENST00000516736 90 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 CDH12P4-201ENST00000517835 295 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 CDH12P3-201ENST00000517935 295 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 CDH12P1-201ENST00000518435 295 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 AC110792.3-201ENST00000595906 1614 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 TCP11X1-202ENST00000622971 1372 ntBASIC4.74□□□□□ -1.65
LHX3Q9UBR4 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.74□□□□□ -1.65
LHX3Q9UBR4 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 RNU6-398P-201ENST00000384143 109 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 AL136131.1-201ENST00000406079 803 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 RPL37P18-201ENST00000411602 243 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 CTSL3P-202ENST00000412179 788 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 NPM1P40-201ENST00000412758 733 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 SETP10-201ENST00000424368 814 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 RPL23AP4-201ENST00000427757 463 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 MRPS33P4-201ENST00000434892 317 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 AC011753.3-201ENST00000443436 406 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 RPS29P33-201ENST00000456717 146 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 RPS29P22-201ENST00000472363 168 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 RNU6-760P-201ENST00000516078 97 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 AC009852.2-201ENST00000567898 485 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 MTCO2P22-201ENST00000603246 681 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 AC005021.1-201ENST00000608730 355 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 AL359922.3-201ENST00000624779 1670 ntBASIC4.73□□□□□ -1.65
LHX3Q9UBR4 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
LHX3Q9UBR4 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms