Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 AP000641.1-201ENST00000531988 1639 ntBASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 RNA5SP151-201ENST00000365632 117 ntBASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 KRR1P1-201ENST00000419430 803 ntBASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 RN7SL435P-201ENST00000584418 282 ntBASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 OR2BH1P-201ENST00000608850 864 ntBASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 AL445363.3-201ENST00000623080 671 ntBASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHANK3Q9BYB0 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 RNA5SP119-201ENST00000362715 117 ntBASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 RN7SKP159-201ENST00000410657 292 ntBASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 AC018644.1-201ENST00000429934 551 ntBASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 AGGF1P6-201ENST00000569213 976 ntBASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 IPO5P1-202ENST00000600039 287 ntBASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 BPIFA4P-203ENST00000603168 689 ntBASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 AC093297.3-201ENST00000607056 2517 ntBASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 AC022417.1-201ENST00000624768 1303 ntBASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 AC104260.2-201ENST00000623551 3497 ntBASIC5.8□□□□□ -1.48
SHANK3Q9BYB0 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 RNU1-63P-201ENST00000383902 164 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 MFSD13B-201ENST00000420133 1290 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 AL157831.1-201ENST00000426134 473 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 AC114495.1-201ENST00000441274 436 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 AC130352.1-201ENST00000602979 661 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 MIR3653-201ENST00000625572 110 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 CCAT2-201ENST00000630920 1752 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 RNA5SP124-201ENST00000362739 110 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 TPT1P2-201ENST00000413105 503 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 RPEP2-201ENST00000432149 701 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 AL050321.1-201ENST00000432363 400 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 RPS29P7-201ENST00000439662 171 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 RPL7P33-201ENST00000444159 742 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 AL132838.2-201ENST00000492041 314 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 AC068993.1-201ENST00000546724 589 ntBASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SHANK3Q9BYB0 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 DDX18P5-201ENST00000534547 1306 ntBASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 PCNPP4-201ENST00000414817 517 ntBASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 RPL23AP38-201ENST00000423801 469 ntBASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 HMGB3P5-201ENST00000428894 612 ntBASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 RPL21P91-201ENST00000429231 479 ntBASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 RPL21P12-201ENST00000559810 515 ntBASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 AC027216.1-201ENST00000577726 685 ntBASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 AC023762.1-201ENST00000603280 584 ntBASIC5.78□□□□□ -1.48
SHANK3Q9BYB0 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms