Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RN7SL727P-201ENST00000482164 296 ntBASIC4.86□□□□□ -1.63
CCDC42Q96M95 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC42Q96M95 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC42Q96M95 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.86□□□□□ -1.63
CCDC42Q96M95 AL110118.1-201ENST00000553543 400 ntBASIC4.86□□□□□ -1.63
CCDC42Q96M95 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC42Q96M95 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC42Q96M95 RPL26P30-202ENST00000602923 645 ntBASIC4.86□□□□□ -1.63
CCDC42Q96M95 AL158196.1-201ENST00000616786 434 ntBASIC4.86□□□□□ -1.63
CCDC42Q96M95 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.86□□□□□ -1.63
CCDC42Q96M95 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC42Q96M95 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC42Q96M95 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.86□□□□□ -1.63
CCDC42Q96M95 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC42Q96M95 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC42Q96M95 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
CCDC42Q96M95 CDY3P-201ENST00000454543 1618 ntBASIC4.86□□□□□ -1.63
CCDC42Q96M95 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC42Q96M95 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC42Q96M95 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC42Q96M95 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC42Q96M95 ZNF137P-201ENST00000456718 1920 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC42Q96M95 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC42Q96M95 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 AC112255.1-201ENST00000624070 2493 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC42Q96M95 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC42Q96M95 RNA5SP28-201ENST00000363841 119 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 SNORA71.2-201ENST00000364941 134 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC42Q96M95 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC42Q96M95 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 SNORA11.5-201ENST00000408163 128 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 GSTM3P2-201ENST00000412746 530 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 MAPRE1P3-201ENST00000435438 796 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 ARAFP2-201ENST00000440565 559 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 CEACAMP7-201ENST00000444105 496 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 MTND6P5-201ENST00000448266 512 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 DDX39BP2-208ENST00000453923 258 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 AC007016.1-201ENST00000512110 244 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 AC015795.1-201ENST00000513669 327 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 RN7SKP276-201ENST00000516242 268 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 SOX5P1-201ENST00000524155 1127 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC42Q96M95 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC42Q96M95 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC42Q96M95 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 A2MP1-204ENST00000566278 4130 ntBASIC4.85□□□□□ -1.63
CCDC42Q96M95 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC42Q96M95 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
CCDC42Q96M95 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC42Q96M95 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC42Q96M95 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 DDX18P3-201ENST00000404856 2007 ntBASIC4.84□□□□□ -1.63
CCDC42Q96M95 AC093909.5-201ENST00000621839 1799 ntBASIC4.84□□□□□ -1.63
CCDC42Q96M95 KARSP3-201ENST00000571212 1504 ntBASIC4.84□□□□□ -1.63
CCDC42Q96M95 OR10J6P-201ENST00000289731 930 ntBASIC4.84□□□□□ -1.63
CCDC42Q96M95 RNU1-15P-201ENST00000353977 144 ntBASIC4.84□□□□□ -1.63
CCDC42Q96M95 RNA5SP307-201ENST00000362863 116 ntBASIC4.84□□□□□ -1.63
CCDC42Q96M95 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 RNA5SP113-201ENST00000410486 84 ntBASIC4.84□□□□□ -1.63
CCDC42Q96M95 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 DYNLL1P7-201ENST00000429273 258 ntBASIC4.84□□□□□ -1.63
CCDC42Q96M95 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 VN1R32P-201ENST00000452234 905 ntBASIC4.84□□□□□ -1.63
CCDC42Q96M95 HMGB3P13-201ENST00000511263 607 ntBASIC4.84□□□□□ -1.63
CCDC42Q96M95 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC42Q96M95 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 SNX18P1Y-201ENST00000616231 511 ntBASIC4.84□□□□□ -1.63
CCDC42Q96M95 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 CGA-206ENST00000630630 832 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC42Q96M95 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
CCDC42Q96M95 TOPORSLP1-201ENST00000467693 2102 ntBASIC4.84□□□□□ -1.64
CCDC42Q96M95 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.84□□□□□ -1.64
CCDC42Q96M95 C4BPAP1-201ENST00000415474 1893 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 132.2 ms