Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 OR8R1P-201ENST00000543943 764 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AL023881.1-201ENST00000621088 301 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 SNORA48.4-201ENST00000391089 134 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 Z97832.1-201ENST00000402490 328 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 DPPA2P2-201ENST00000418220 897 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 RPL34P6-201ENST00000432390 345 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC046176.1-201ENST00000435260 1170 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 DEFB109A-201ENST00000482450 265 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 RPL36AP41-201ENST00000493820 306 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 FAM91A3P-201ENST00000456826 2544 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 SNORA70.10-201ENST00000384515 134 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 RN7SKP106-201ENST00000410832 272 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AL121878.1-201ENST00000418638 859 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 RPS12P31-201ENST00000491419 398 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 RPS27AP16-201ENST00000492222 470 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 RNA5SP143-201ENST00000516936 115 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AL591034.3-201ENST00000605511 685 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 CROT-204ENST00000442291 1993 ntTSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 SNORA71.3-201ENST00000362582 128 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 BX510359.2-201ENST00000417920 305 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AL390879.1-201ENST00000439143 386 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 RNU1-88P-201ENST00000459274 128 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 NIFKP7-201ENST00000503365 834 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 NDUFB4P12-201ENST00000513465 390 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 ARL6IP1P3-201ENST00000524544 560 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC093014.1-201ENST00000548926 724 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AL049839.1-201ENST00000556151 657 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC011270.1-201ENST00000558606 583 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC007224.1-201ENST00000564410 144 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 SNORA74C-1-201ENST00000580726 201 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC022146.1-201ENST00000595307 847 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC021146.4-201ENST00000309229 279 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 ATP5HP3-201ENST00000396994 486 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC009506.2-201ENST00000420635 840 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC010476.1-201ENST00000519111 851 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 FRG1EP-201ENST00000634469 770 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 ECM1P2-201ENST00000503354 1577 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC020633.1-201ENST00000468439 2247 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 SNORA11.1-201ENST00000408133 129 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 RNU4-25P-201ENST00000410569 230 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms