Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
CHD3Q12873 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.12□□□□□ -1.75
CHD3Q12873 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.12□□□□□ -1.75
CHD3Q12873 U3.22-201ENST00000391120 215 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.12□□□□□ -1.75
CHD3Q12873 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.12□□□□□ -1.75
CHD3Q12873 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.12□□□□□ -1.75
CHD3Q12873 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.12□□□□□ -1.75
CHD3Q12873 AL356390.1-201ENST00000455684 397 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 OR52A4P-201ENST00000472867 958 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 RN7SL319P-201ENST00000480656 221 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 AC011005.3-201ENST00000491624 395 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC4.12□□□□□ -1.75
CHD3Q12873 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.12□□□□□ -1.75
CHD3Q12873 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC4.12□□□□□ -1.75
CHD3Q12873 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.12□□□□□ -1.75
CHD3Q12873 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.12□□□□□ -1.75
CHD3Q12873 RN7SL802P-201ENST00000577858 299 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.12□□□□□ -1.75
CHD3Q12873 AC067959.1-201ENST00000604334 379 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.12□□□□□ -1.75
CHD3Q12873 AL133243.3-201ENST00000617415 3004 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 AL442639.1-201ENST00000625030 1899 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHD3Q12873 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.12□□□□□ -1.75
CHD3Q12873 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CHD3Q12873 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.12□□□□□ -1.75
CHD3Q12873 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHD3Q12873 AL513548.1-201ENST00000562904 1724 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CHD3Q12873 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHD3Q12873 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHD3Q12873 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHD3Q12873 RNU4-44P-201ENST00000363050 141 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 AC013429.2-201ENST00000418798 781 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 VN1R37P-201ENST00000419096 748 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 E2F6P2-201ENST00000420708 748 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 AL158073.1-201ENST00000426848 1104 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CHD3Q12873 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.12□□□□□ -1.75
CHD3Q12873 CBX1P1-201ENST00000440184 427 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.12□□□□□ -1.75
CHD3Q12873 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.12□□□□□ -1.75
CHD3Q12873 Z95152.1-201ENST00000453556 656 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.12□□□□□ -1.75
CHD3Q12873 AC073358.1-201ENST00000505671 684 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.12□□□□□ -1.75
CHD3Q12873 CYCSP29-201ENST00000533731 318 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.12□□□□□ -1.75
CHD3Q12873 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CHD3Q12873 AC133555.2-201ENST00000550213 292 ntBASIC4.12□□□□□ -1.75
CHD3Q12873 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.12□□□□□ -1.75
CHD3Q12873 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.12□□□□□ -1.75
CHD3Q12873 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.12□□□□□ -1.75
CHD3Q12873 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.12□□□□□ -1.75
CHD3Q12873 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.12□□□□□ -1.75
CHD3Q12873 AC097461.1-201ENST00000568928 2821 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 AC022417.1-201ENST00000624768 1303 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 AC112198.2-201ENST00000426589 6996 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.11□□□□□ -1.75
CHD3Q12873 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 SNORA68.2-201ENST00000391263 128 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 AP000580.1-201ENST00000404439 358 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.11□□□□□ -1.75
CHD3Q12873 NRBF2P2-201ENST00000413087 861 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.11□□□□□ -1.75
CHD3Q12873 TRGV7-201ENST00000427089 353 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 RPS27AP12-201ENST00000429552 465 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 AC005154.2-201ENST00000438110 379 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 RPL36AP15-201ENST00000444514 266 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.11□□□□□ -1.75
CHD3Q12873 AC011276.1-201ENST00000469688 323 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 AC105031.1-201ENST00000518550 476 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 AC021483.2-201ENST00000567415 758 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC4.11□□□□□ -1.75
CHD3Q12873 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.11□□□□□ -1.75
CHD3Q12873 AC005191.1-201ENST00000603950 358 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.11□□□□□ -1.75
CHD3Q12873 AC011815.3-201ENST00000624194 473 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.11□□□□□ -1.75
CHD3Q12873 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.11□□□□□ -1.75
CHD3Q12873 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.11□□□□□ -1.75
CHD3Q12873 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 AP001273.1-201ENST00000624493 3152 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 SALL4P2-201ENST00000423288 2910 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 OR51H2P-202ENST00000641424 3046 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 AC015813.6-201ENST00000624409 5808 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms