Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NEK3P51956 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.68□□□□□ -1.5
NEK3P51956 AC138832.1-201ENST00000522871 556 ntBASIC5.68□□□□□ -1.5
NEK3P51956 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
NEK3P51956 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC5.68□□□□□ -1.5
NEK3P51956 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
NEK3P51956 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC5.68□□□□□ -1.5
NEK3P51956 AC027455.1-201ENST00000574104 594 ntBASIC5.68□□□□□ -1.5
NEK3P51956 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.68□□□□□ -1.5
NEK3P51956 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.68□□□□□ -1.5
NEK3P51956 RPAP2P1-201ENST00000603626 1168 ntBASIC5.68□□□□□ -1.5
NEK3P51956 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NEK3P51956 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.68□□□□□ -1.5
NEK3P51956 AC079395.2-201ENST00000610982 737 ntBASIC5.68□□□□□ -1.5
NEK3P51956 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.68□□□□□ -1.5
NEK3P51956 AC234782.5-201ENST00000617723 324 ntBASIC5.68□□□□□ -1.5
NEK3P51956 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.68□□□□□ -1.5
NEK3P51956 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
NEK3P51956 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
NEK3P51956 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
NEK3P51956 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.68□□□□□ -1.5
NEK3P51956 OR4F13P-202ENST00000560066 2054 ntBASIC5.68□□□□□ -1.5
NEK3P51956 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NEK3P51956 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
NEK3P51956 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.68□□□□□ -1.5
NEK3P51956 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
NEK3P51956 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
NEK3P51956 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NEK3P51956 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
NEK3P51956 AC092376.2-201ENST00000622621 4116 ntBASIC5.67□□□□□ -1.5
NEK3P51956 CASC19-248ENST00000641674 1356 ntBASIC5.67□□□□□ -1.5
NEK3P51956 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.67□□□□□ -1.5
NEK3P51956 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
NEK3P51956 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.67□□□□□ -1.5
NEK3P51956 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.67□□□□□ -1.5
NEK3P51956 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
NEK3P51956 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.67□□□□□ -1.5
NEK3P51956 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.67□□□□□ -1.5
NEK3P51956 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NEK3P51956 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
NEK3P51956 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.67□□□□□ -1.5
NEK3P51956 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.67□□□□□ -1.5
NEK3P51956 AC006335.2-201ENST00000437993 330 ntBASIC5.67□□□□□ -1.5
NEK3P51956 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.67□□□□□ -1.5
NEK3P51956 AL390119.1-201ENST00000440329 312 ntBASIC5.67□□□□□ -1.5
NEK3P51956 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.67□□□□□ -1.5
NEK3P51956 MTND1P33-201ENST00000446251 917 ntBASIC5.67□□□□□ -1.5
NEK3P51956 EXOSC3P1-201ENST00000448649 500 ntBASIC5.67□□□□□ -1.5
NEK3P51956 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.67□□□□□ -1.5
NEK3P51956 AL450023.1-201ENST00000450868 751 ntBASIC5.67□□□□□ -1.5
NEK3P51956 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC5.67□□□□□ -1.5
NEK3P51956 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.67□□□□□ -1.5
NEK3P51956 AC008494.2-201ENST00000514544 370 ntBASIC5.67□□□□□ -1.5
NEK3P51956 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.67□□□□□ -1.5
NEK3P51956 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.67□□□□□ -1.5
NEK3P51956 MTND2P32-201ENST00000521584 1038 ntBASIC5.67□□□□□ -1.5
NEK3P51956 SMARCE1P4-201ENST00000523647 241 ntBASIC5.67□□□□□ -1.5
NEK3P51956 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.67□□□□□ -1.5
NEK3P51956 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC5.67□□□□□ -1.5
NEK3P51956 AC122688.1-201ENST00000541494 223 ntBASIC5.67□□□□□ -1.5
NEK3P51956 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC5.67□□□□□ -1.5
NEK3P51956 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.67□□□□□ -1.5
NEK3P51956 AL049838.1-201ENST00000563647 981 ntBASIC5.67□□□□□ -1.5
NEK3P51956 AC015720.2-201ENST00000567709 334 ntBASIC5.67□□□□□ -1.5
NEK3P51956 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.67□□□□□ -1.5
NEK3P51956 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.67□□□□□ -1.5
NEK3P51956 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.67□□□□□ -1.5
NEK3P51956 AP001542.2-201ENST00000593141 364 ntBASIC5.67□□□□□ -1.5
NEK3P51956 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.67□□□□□ -1.5
NEK3P51956 AC009237.13-201ENST00000603193 276 ntBASIC5.67□□□□□ -1.5
NEK3P51956 AC002487.1-201ENST00000604565 994 ntBASIC5.67□□□□□ -1.5
NEK3P51956 AC034229.4-201ENST00000607861 441 ntBASIC5.67□□□□□ -1.5
NEK3P51956 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC5.67□□□□□ -1.5
NEK3P51956 AC015908.5-201ENST00000623289 343 ntBASIC5.67□□□□□ -1.5
NEK3P51956 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.67□□□□□ -1.5
NEK3P51956 AC144833.1-201ENST00000567953 4089 ntBASIC5.67□□□□□ -1.5
NEK3P51956 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.67□□□□□ -1.5
NEK3P51956 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NEK3P51956 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.67□□□□□ -1.5
NEK3P51956 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
NEK3P51956 AC025263.3-201ENST00000622965 1396 ntBASIC5.67□□□□□ -1.5
NEK3P51956 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.67□□□□□ -1.5
NEK3P51956 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC5.66□□□□□ -1.5
NEK3P51956 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NEK3P51956 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NEK3P51956 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
NEK3P51956 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.66□□□□□ -1.5
NEK3P51956 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NEK3P51956 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NEK3P51956 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
NEK3P51956 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
NEK3P51956 MTCO2P31-201ENST00000402702 684 ntBASIC5.66□□□□□ -1.5
NEK3P51956 MTATP6P20-201ENST00000414147 562 ntBASIC5.66□□□□□ -1.5
NEK3P51956 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NEK3P51956 MTCO2P23-201ENST00000425216 680 ntBASIC5.66□□□□□ -1.5
NEK3P51956 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.66□□□□□ -1.5
NEK3P51956 GTF2IP3-201ENST00000433887 494 ntBASIC5.66□□□□□ -1.5
NEK3P51956 AC012075.1-201ENST00000436549 580 ntBASIC5.66□□□□□ -1.5
NEK3P51956 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC5.66□□□□□ -1.5
NEK3P51956 SPRYD7P1-201ENST00000443861 570 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms