Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
SMARCA1P28370 RNU5B-1-201ENST00000363286 116 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SMARCA1P28370 MIR600-201ENST00000385007 98 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 ATP5HP3-201ENST00000396994 486 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 CHMP1B2P-201ENST00000399581 597 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AL136131.1-201ENST00000406079 803 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AC023128.2-201ENST00000420880 1223 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 OR6K4P-201ENST00000423179 955 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC6.04□□□□□ -1.44
SMARCA1P28370 AC009238.2-201ENST00000431026 355 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC6.04□□□□□ -1.44
SMARCA1P28370 GAPDHP58-201ENST00000438477 1006 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC6.04□□□□□ -1.44
SMARCA1P28370 KNOP1P3-201ENST00000446933 426 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AL096803.2-201ENST00000450032 677 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AC005532.2-201ENST00000467154 373 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 RN7SL189P-201ENST00000468631 289 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AC097484.1-201ENST00000471148 389 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC6.04□□□□□ -1.44
SMARCA1P28370 AC025459.1-201ENST00000504072 156 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC6.04□□□□□ -1.44
SMARCA1P28370 AC092709.1-201ENST00000521355 1045 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AC013701.1-201ENST00000522657 465 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SMARCA1P28370 AC027369.5-201ENST00000533838 755 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 CASP1-216ENST00000534497 825 ntTSL 5 BASIC6.04□□□□□ -1.44
SMARCA1P28370 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
SMARCA1P28370 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
SMARCA1P28370 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
SMARCA1P28370 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
SMARCA1P28370 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC6.04□□□□□ -1.44
SMARCA1P28370 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC6.04□□□□□ -1.44
SMARCA1P28370 AC122134.1-201ENST00000565664 1104 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SMARCA1P28370 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.04□□□□□ -1.44
SMARCA1P28370 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC6.04□□□□□ -1.44
SMARCA1P28370 AC022022.2-201ENST00000602989 360 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AC073387.2-201ENST00000604797 784 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AC097065.2-201ENST00000608159 533 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AL355493.4-201ENST00000618530 292 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 AL035461.2-201ENST00000619201 524 ntBASIC6.04□□□□□ -1.44
SMARCA1P28370 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SMARCA1P28370 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SMARCA1P28370 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SMARCA1P28370 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC6.03□□□□□ -1.44
SMARCA1P28370 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC6.03□□□□□ -1.44
SMARCA1P28370 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC6.03□□□□□ -1.44
SMARCA1P28370 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SMARCA1P28370 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SMARCA1P28370 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
SMARCA1P28370 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SMARCA1P28370 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC6.03□□□□□ -1.44
SMARCA1P28370 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC6.03□□□□□ -1.44
SMARCA1P28370 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SMARCA1P28370 AC090018.1-201ENST00000434369 367 ntBASIC6.03□□□□□ -1.44
SMARCA1P28370 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC6.03□□□□□ -1.44
SMARCA1P28370 AL591719.1-201ENST00000444669 744 ntBASIC6.03□□□□□ -1.44
SMARCA1P28370 Z95152.1-201ENST00000453556 656 ntBASIC6.03□□□□□ -1.44
SMARCA1P28370 CREM-220ENST00000463314 964 ntTSL 2 BASIC6.03□□□□□ -1.44
SMARCA1P28370 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC6.03□□□□□ -1.44
SMARCA1P28370 AC037198.2-201ENST00000478845 733 ntBASIC6.03□□□□□ -1.44
SMARCA1P28370 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SMARCA1P28370 AC113420.1-201ENST00000507903 571 ntBASIC6.03□□□□□ -1.44
SMARCA1P28370 AC147055.3-201ENST00000510547 851 ntBASIC6.03□□□□□ -1.44
SMARCA1P28370 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC6.03□□□□□ -1.44
SMARCA1P28370 SNORA31.13-201ENST00000516624 135 ntBASIC6.03□□□□□ -1.44
SMARCA1P28370 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC6.03□□□□□ -1.44
SMARCA1P28370 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC6.03□□□□□ -1.44
SMARCA1P28370 OR10V3P-201ENST00000525712 725 ntBASIC6.03□□□□□ -1.44
SMARCA1P28370 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
SMARCA1P28370 AC023538.1-201ENST00000534576 736 ntBASIC6.03□□□□□ -1.44
SMARCA1P28370 VBP1-203ENST00000535916 944 ntTSL 2 BASIC6.03□□□□□ -1.44
SMARCA1P28370 RERGL-202ENST00000536890 367 ntTSL 3 BASIC6.03□□□□□ -1.44
SMARCA1P28370 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC6.03□□□□□ -1.44
SMARCA1P28370 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SMARCA1P28370 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC6.03□□□□□ -1.44
SMARCA1P28370 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC6.03□□□□□ -1.44
SMARCA1P28370 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
SMARCA1P28370 AC016769.4-201ENST00000616893 535 ntBASIC6.03□□□□□ -1.44
SMARCA1P28370 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC6.03□□□□□ -1.44
SMARCA1P28370 AP002505.2-201ENST00000623585 696 ntBASIC6.03□□□□□ -1.44
SMARCA1P28370 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC6.03□□□□□ -1.44
SMARCA1P28370 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SMARCA1P28370 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SMARCA1P28370 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
SMARCA1P28370 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6.03□□□□□ -1.44
SMARCA1P28370 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SMARCA1P28370 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC6.03□□□□□ -1.44
SMARCA1P28370 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
SMARCA1P28370 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
SMARCA1P28370 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.02□□□□□ -1.45
SMARCA1P28370 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC6.02□□□□□ -1.45
SMARCA1P28370 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 U8.4-201ENST00000363626 134 ntBASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms