Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
COL5A3P25940 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
COL5A3P25940 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A3P25940 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A3P25940 AL355852.1-201ENST00000454081 1771 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
COL5A3P25940 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A3P25940 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL5A3P25940 AC006946.1-201ENST00000429106 328 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.54□□□□□ -1.52
COL5A3P25940 AL445584.1-201ENST00000431451 330 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 MRPS21P3-201ENST00000436696 262 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.54□□□□□ -1.52
COL5A3P25940 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.54□□□□□ -1.52
COL5A3P25940 VN1R34P-201ENST00000447387 883 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5.54□□□□□ -1.52
COL5A3P25940 AC010374.1-201ENST00000503762 1237 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 AL592156.1-201ENST00000508758 304 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 AC087499.8-201ENST00000578406 226 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.54□□□□□ -1.52
COL5A3P25940 AP002360.3-201ENST00000607673 710 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.54□□□□□ -1.52
COL5A3P25940 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.54□□□□□ -1.52
COL5A3P25940 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC5.54□□□□□ -1.52
COL5A3P25940 AL136164.3-201ENST00000624429 3978 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.54□□□□□ -1.52
COL5A3P25940 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A3P25940 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A3P25940 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A3P25940 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A3P25940 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A3P25940 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A3P25940 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A3P25940 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.53□□□□□ -1.52
COL5A3P25940 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A3P25940 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A3P25940 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.53□□□□□ -1.52
COL5A3P25940 TPT1P2-201ENST00000413105 503 ntBASIC5.53□□□□□ -1.52
COL5A3P25940 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.53□□□□□ -1.52
COL5A3P25940 RPL6P29-201ENST00000414863 865 ntBASIC5.53□□□□□ -1.52
COL5A3P25940 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.53□□□□□ -1.52
COL5A3P25940 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.53□□□□□ -1.52
COL5A3P25940 AL162151.2-201ENST00000448875 158 ntBASIC5.53□□□□□ -1.52
COL5A3P25940 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.53□□□□□ -1.52
COL5A3P25940 RNA5SP446-201ENST00000515955 82 ntBASIC5.53□□□□□ -1.52
COL5A3P25940 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
COL5A3P25940 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.53□□□□□ -1.52
COL5A3P25940 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.53□□□□□ -1.52
COL5A3P25940 AC109446.4-201ENST00000623235 2755 ntBASIC5.53□□□□□ -1.52
COL5A3P25940 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A3P25940 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A3P25940 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A3P25940 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.52□□□□□ -1.53
COL5A3P25940 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A3P25940 AC073136.1-201ENST00000449426 2884 ntBASIC5.52□□□□□ -1.53
COL5A3P25940 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.52□□□□□ -1.53
COL5A3P25940 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A3P25940 AC069157.1-201ENST00000421749 137 ntBASIC5.52□□□□□ -1.53
COL5A3P25940 ARAFP1-201ENST00000422172 605 ntBASIC5.52□□□□□ -1.53
COL5A3P25940 AL133547.1-201ENST00000448546 220 ntBASIC5.52□□□□□ -1.53
COL5A3P25940 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.52□□□□□ -1.53
COL5A3P25940 AC023632.4-201ENST00000517783 191 ntBASIC5.52□□□□□ -1.53
COL5A3P25940 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.52□□□□□ -1.53
COL5A3P25940 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.52□□□□□ -1.53
COL5A3P25940 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.52□□□□□ -1.53
COL5A3P25940 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.52□□□□□ -1.53
COL5A3P25940 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A3P25940 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A3P25940 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A3P25940 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A3P25940 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A3P25940 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A3P25940 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A3P25940 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A3P25940 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
COL5A3P25940 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
COL5A3P25940 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A3P25940 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A3P25940 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.51□□□□□ -1.53
COL5A3P25940 AL157385.1-201ENST00000446973 268 ntBASIC5.51□□□□□ -1.53
COL5A3P25940 AL358232.1-201ENST00000448030 501 ntBASIC5.51□□□□□ -1.53
COL5A3P25940 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A3P25940 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.51□□□□□ -1.53
COL5A3P25940 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.51□□□□□ -1.53
COL5A3P25940 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.51□□□□□ -1.53
COL5A3P25940 AC053481.4-201ENST00000583164 216 ntBASIC5.51□□□□□ -1.53
COL5A3P25940 MIR4660-201ENST00000583549 74 ntBASIC5.51□□□□□ -1.53
COL5A3P25940 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.51□□□□□ -1.53
COL5A3P25940 AC090220.1-201ENST00000593078 1699 ntBASIC5.51□□□□□ -1.53
COL5A3P25940 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.51□□□□□ -1.53
COL5A3P25940 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A3P25940 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A3P25940 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A3P25940 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.51□□□□□ -1.53
COL5A3P25940 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A3P25940 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A3P25940 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
COL5A3P25940 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
COL5A3P25940 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A3P25940 FCF1P5-201ENST00000406490 482 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms