Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MIR8069-2-201ENST00000621412 86 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 AC004808.2-201ENST00000627965 773 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS39Q96JC1 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
VPS39Q96JC1 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS39Q96JC1 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
VPS39Q96JC1 AL359922.3-201ENST00000624779 1670 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS39Q96JC1 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 LINC01109-201ENST00000603837 3081 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
VPS39Q96JC1 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
VPS39Q96JC1 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
VPS39Q96JC1 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS39Q96JC1 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC008549.2-201ENST00000333482 706 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 MIR1271-201ENST00000408537 86 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 RNU6-564P-201ENST00000410983 104 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 EIF4HP2-201ENST00000424380 563 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS39Q96JC1 RPL34P6-201ENST00000432390 345 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC007563.3-201ENST00000433233 371 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 AL353898.1-201ENST00000444055 238 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 MRPL48P1-201ENST00000445390 636 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 NDUFA5P8-201ENST00000449019 346 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC005229.2-201ENST00000456995 399 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 RNA5SP103-201ENST00000459503 118 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 RN7SL172P-201ENST00000460535 303 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 HMGN2P25-201ENST00000486956 268 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 RN7SL30P-201ENST00000488416 306 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 SNRPCP2-201ENST00000504370 475 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC073358.1-201ENST00000505671 684 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 RNA5SP43-201ENST00000516559 110 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 MIR6826-201ENST00000617808 98 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 AL391597.1-201ENST00000618707 694 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 MIR6886-201ENST00000619864 61 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 CGA-206ENST00000630630 832 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 ZNF652P1-201ENST00000442420 1309 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS39Q96JC1 AL034370.1-201ENST00000397254 1590 ntBASIC4.91□□□□□ -1.62
VPS39Q96JC1 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
VPS39Q96JC1 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
VPS39Q96JC1 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.9□□□□□ -1.62
VPS39Q96JC1 SALL4P2-201ENST00000423288 2910 ntBASIC4.9□□□□□ -1.62
VPS39Q96JC1 THAP12P4-201ENST00000528321 2266 ntBASIC4.9□□□□□ -1.62
VPS39Q96JC1 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.9□□□□□ -1.62
VPS39Q96JC1 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.9□□□□□ -1.62
VPS39Q96JC1 CASC19-206ENST00000641028 1430 ntBASIC4.9□□□□□ -1.62
VPS39Q96JC1 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.62
VPS39Q96JC1 AP001642.1-201ENST00000624727 2117 ntBASIC4.9□□□□□ -1.62
VPS39Q96JC1 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.9□□□□□ -1.62
VPS39Q96JC1 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.9□□□□□ -1.62
VPS39Q96JC1 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
VPS39Q96JC1 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.9□□□□□ -1.62
VPS39Q96JC1 SNURFL-201ENST00000309296 343 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 RNU6-666P-201ENST00000363499 107 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 UBBP2-201ENST00000376781 231 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 MIR223-201ENST00000385204 110 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS39Q96JC1 AL021331.1-201ENST00000402817 582 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
VPS39Q96JC1 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS39Q96JC1 RGS17P1-201ENST00000423358 553 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
VPS39Q96JC1 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 CYCSP34-201ENST00000458172 304 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 RNU7-27P-201ENST00000459281 62 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 ACTR6P1-201ENST00000514311 1104 ntBASIC4.9□□□□□ -1.63
VPS39Q96JC1 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
VPS39Q96JC1 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms