Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 snoU13.1-201ENST00000459157 104 ntBASIC6.29□□□□□ -1.4
SYNE4Q8N205 AC022133.1-201ENST00000490961 571 ntBASIC6.29□□□□□ -1.4
SYNE4Q8N205 SSR3-208ENST00000496050 579 ntTSL 4 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 IGKV2D-10-201ENST00000520194 281 ntBASIC6.29□□□□□ -1.4
SYNE4Q8N205 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 AC012339.2-201ENST00000523996 453 ntBASIC6.29□□□□□ -1.4
SYNE4Q8N205 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 OR8Q1P-201ENST00000526467 655 ntBASIC6.29□□□□□ -1.4
SYNE4Q8N205 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE4Q8N205 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 MIR5096-201ENST00000583713 70 ntBASIC6.29□□□□□ -1.4
SYNE4Q8N205 EIF1P5-201ENST00000585002 234 ntBASIC6.29□□□□□ -1.4
SYNE4Q8N205 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 AC096586.1-201ENST00000610267 561 ntBASIC6.29□□□□□ -1.4
SYNE4Q8N205 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC6.29□□□□□ -1.4
SYNE4Q8N205 CYCSP41-201ENST00000616920 296 ntBASIC6.29□□□□□ -1.4
SYNE4Q8N205 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 AP003476.1-201ENST00000623984 516 ntBASIC6.29□□□□□ -1.4
SYNE4Q8N205 AL590396.4-201ENST00000636779 956 ntBASIC6.29□□□□□ -1.4
SYNE4Q8N205 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE4Q8N205 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 SAMM50P1-201ENST00000455403 1399 ntBASIC6.29□□□□□ -1.4
SYNE4Q8N205 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE4Q8N205 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE4Q8N205 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE4Q8N205 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE4Q8N205 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE4Q8N205 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE4Q8N205 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE4Q8N205 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE4Q8N205 CUL4AP1-201ENST00000514750 1863 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE4Q8N205 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE4Q8N205 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE4Q8N205 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE4Q8N205 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE4Q8N205 AL355834.1-201ENST00000556602 3965 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE4Q8N205 RNU6-792P-201ENST00000363490 107 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE4Q8N205 RNA5SP332-201ENST00000391063 115 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 SNX10-203ENST00000409367 746 ntTSL 5 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 ARAFP1-201ENST00000422172 605 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 RPL18P10-201ENST00000425606 538 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC007559.1-201ENST00000428736 355 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 RPL7AP49-201ENST00000429522 581 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 AL591438.1-201ENST00000433508 581 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC239367.2-201ENST00000447309 705 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 EXOSC3P1-201ENST00000448649 500 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 ATP5A1P7-201ENST00000453978 1279 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC020898.1-201ENST00000474167 787 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC021193.1-201ENST00000511607 420 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 RNA5SP116-201ENST00000516132 98 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 REXO2-218ENST00000544827 880 ntTSL 3 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC145350.1-201ENST00000567426 208 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC068790.7-201ENST00000602347 528 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC020910.3-201ENST00000603701 874 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC005377.1-201ENST00000605126 456 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 AC008121.2-201ENST00000614647 523 ntBASIC6.28□□□□□ -1.4
SYNE4Q8N205 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC6.28□□□□□ -1.4
SYNE4Q8N205 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.27□□□□□ -1.4
SYNE4Q8N205 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.27□□□□□ -1.4
SYNE4Q8N205 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE4Q8N205 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6.27□□□□□ -1.41
SYNE4Q8N205 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.27□□□□□ -1.41
SYNE4Q8N205 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE4Q8N205 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE4Q8N205 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE4Q8N205 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE4Q8N205 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE4Q8N205 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms