Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC104687.2-201ENST00000604442 342 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC015922.4-201ENST00000612568 690 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 uc_338.18-201ENST00000615451 175 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC091905.4-201ENST00000623432 202 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
SKA3Q8IX90 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
SKA3Q8IX90 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SKA3Q8IX90 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SKA3Q8IX90 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SKA3Q8IX90 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SKA3Q8IX90 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 RN7SKP95-201ENST00000362860 303 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 RNU6-1320P-201ENST00000390838 107 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 RNU6-1269P-201ENST00000391139 107 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 NPM1P10-201ENST00000398310 865 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 TANK-203ENST00000402568 878 ntTSL 5 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 CHEK2P3-201ENST00000416118 248 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 NPM1P26-201ENST00000426339 738 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 PSMD10P3-201ENST00000437000 448 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 AL138787.1-202ENST00000437804 898 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SKA3Q8IX90 TRY2P-201ENST00000448860 689 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 RNU6-599P-201ENST00000459383 107 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 RNU6-1193P-201ENST00000459461 107 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 RN7SL97P-201ENST00000486780 299 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 AC008147.3-201ENST00000548666 354 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 AC012213.4-201ENST00000606457 354 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 AC100814.1-201ENST00000606963 623 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 AC211433.2-201ENST00000608433 387 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 MIR7155-201ENST00000615925 56 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 RNU6-368P-201ENST00000620928 107 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 RNU6-538P-201ENST00000622329 107 ntBASIC4.32□□□□□ -1.72
SKA3Q8IX90 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
SKA3Q8IX90 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
SKA3Q8IX90 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.32□□□□□ -1.72
SKA3Q8IX90 AC091046.3-201ENST00000631455 1574 ntBASIC4.31□□□□□ -1.72
SKA3Q8IX90 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.31□□□□□ -1.72
SKA3Q8IX90 CNOT6LP1-201ENST00000559681 1462 ntBASIC4.31□□□□□ -1.72
SKA3Q8IX90 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 AL356317.1-201ENST00000396110 1436 ntBASIC4.31□□□□□ -1.72
SKA3Q8IX90 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SKA3Q8IX90 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SKA3Q8IX90 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SKA3Q8IX90 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 RN7SKP104-201ENST00000362605 328 ntBASIC4.31□□□□□ -1.72
SKA3Q8IX90 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 AL645927.1-201ENST00000396783 406 ntBASIC4.31□□□□□ -1.72
SKA3Q8IX90 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SKA3Q8IX90 TBCAP2-201ENST00000416175 326 ntBASIC4.31□□□□□ -1.72
SKA3Q8IX90 ATG4AP1-201ENST00000416893 538 ntBASIC4.31□□□□□ -1.72
SKA3Q8IX90 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SKA3Q8IX90 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 RPS26P4-201ENST00000431743 355 ntBASIC4.31□□□□□ -1.72
SKA3Q8IX90 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 NDUFA5P1-201ENST00000433858 341 ntBASIC4.31□□□□□ -1.72
SKA3Q8IX90 RPL7P11-201ENST00000437586 658 ntBASIC4.31□□□□□ -1.72
SKA3Q8IX90 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 PRPF38AP2-201ENST00000438179 851 ntBASIC4.31□□□□□ -1.72
SKA3Q8IX90 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 AC005868.1-201ENST00000536421 331 ntBASIC4.31□□□□□ -1.72
SKA3Q8IX90 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.31□□□□□ -1.72
SKA3Q8IX90 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms