Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 NOL8P1-201ENST00000508336 3529 ntBASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 MAPK10-286ENST00000641208 8747 ntBASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 PGBD4P4-201ENST00000509673 613 ntBASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 OR7A19P-201ENST00000608051 733 ntBASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 AC067931.1-201ENST00000624190 671 ntBASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 AP002512.4-202ENST00000641599 4530 ntBASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
CCDC88AQ3V6T2 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 RAB9AP4-201ENST00000415230 609 ntBASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 AC006499.6-201ENST00000511169 607 ntBASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 MTND4LP31-201ENST00000514859 294 ntBASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 AC025884.1-201ENST00000556034 378 ntBASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 Z74021.1-201ENST00000423610 407 ntBASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 AL356121.2-201ENST00000624715 780 ntBASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC88AQ3V6T2 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 AL358178.1-201ENST00000407698 397 ntBASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 AC093578.1-201ENST00000415219 368 ntBASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 GOT2P5-201ENST00000433995 546 ntBASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 LARP1BP1-201ENST00000506036 1359 ntBASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC88AQ3V6T2 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 MIR670-201ENST00000390142 98 ntBASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 RCC2P2-201ENST00000422174 918 ntBASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 AC011998.1-201ENST00000433403 117 ntBASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 AC006326.1-201ENST00000445465 787 ntBASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 AC091959.2-201ENST00000477363 321 ntBASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 AP005019.3-201ENST00000620418 560 ntBASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 ICE2P1-201ENST00000512800 1849 ntBASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC88AQ3V6T2 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms