Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.87□□□□□ -1.63
COL4A4P53420 HMGB3P16-201ENST00000508037 287 ntBASIC4.87□□□□□ -1.63
COL4A4P53420 RNA5SP303-201ENST00000516192 130 ntBASIC4.87□□□□□ -1.63
COL4A4P53420 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.87□□□□□ -1.63
COL4A4P53420 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.87□□□□□ -1.63
COL4A4P53420 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.87□□□□□ -1.63
COL4A4P53420 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.87□□□□□ -1.63
COL4A4P53420 AP005019.3-201ENST00000620418 560 ntBASIC4.87□□□□□ -1.63
COL4A4P53420 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
COL4A4P53420 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL4A4P53420 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL4A4P53420 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
COL4A4P53420 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
COL4A4P53420 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL4A4P53420 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.87□□□□□ -1.63
COL4A4P53420 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.87□□□□□ -1.63
COL4A4P53420 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 RNU6-525P-201ENST00000363685 104 ntBASIC4.86□□□□□ -1.63
COL4A4P53420 RNA5SP151-201ENST00000365632 117 ntBASIC4.86□□□□□ -1.63
COL4A4P53420 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 BTF3P10-201ENST00000433415 495 ntBASIC4.86□□□□□ -1.63
COL4A4P53420 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC4.86□□□□□ -1.63
COL4A4P53420 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.86□□□□□ -1.63
COL4A4P53420 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.86□□□□□ -1.63
COL4A4P53420 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.86□□□□□ -1.63
COL4A4P53420 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.86□□□□□ -1.63
COL4A4P53420 AC025884.1-201ENST00000556034 378 ntBASIC4.86□□□□□ -1.63
COL4A4P53420 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC4.86□□□□□ -1.63
COL4A4P53420 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.86□□□□□ -1.63
COL4A4P53420 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.86□□□□□ -1.63
COL4A4P53420 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 AC073137.1-201ENST00000605636 634 ntBASIC4.86□□□□□ -1.63
COL4A4P53420 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.86□□□□□ -1.63
COL4A4P53420 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.86□□□□□ -1.63
COL4A4P53420 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
COL4A4P53420 LARP1BP1-201ENST00000506036 1359 ntBASIC4.86□□□□□ -1.63
COL4A4P53420 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
COL4A4P53420 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
COL4A4P53420 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
COL4A4P53420 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 ZNF402P-201ENST00000404435 3100 ntBASIC4.86□□□□□ -1.63
COL4A4P53420 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
COL4A4P53420 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
COL4A4P53420 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.86□□□□□ -1.63
COL4A4P53420 RPS26P4-201ENST00000431743 355 ntBASIC4.86□□□□□ -1.63
COL4A4P53420 NMNAT1P2-201ENST00000435192 860 ntBASIC4.86□□□□□ -1.63
COL4A4P53420 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.86□□□□□ -1.63
COL4A4P53420 AL445433.1-201ENST00000457507 257 ntBASIC4.86□□□□□ -1.63
COL4A4P53420 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC4.86□□□□□ -1.63
COL4A4P53420 HNRNPCP4-201ENST00000571636 900 ntBASIC4.86□□□□□ -1.63
COL4A4P53420 RN7SL371P-201ENST00000578099 267 ntBASIC4.86□□□□□ -1.63
COL4A4P53420 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.86□□□□□ -1.63
COL4A4P53420 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC4.86□□□□□ -1.63
COL4A4P53420 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL4A4P53420 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL4A4P53420 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL4A4P53420 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL4A4P53420 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL4A4P53420 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
COL4A4P53420 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL4A4P53420 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
COL4A4P53420 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
COL4A4P53420 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL4A4P53420 AL158163.1-201ENST00000603915 1649 ntBASIC4.85□□□□□ -1.63
COL4A4P53420 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL4A4P53420 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL4A4P53420 YY1P1-201ENST00000427625 668 ntBASIC4.85□□□□□ -1.63
COL4A4P53420 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.85□□□□□ -1.63
COL4A4P53420 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.85□□□□□ -1.63
COL4A4P53420 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.85□□□□□ -1.63
COL4A4P53420 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.85□□□□□ -1.63
COL4A4P53420 RPL23AP52-201ENST00000439311 478 ntBASIC4.85□□□□□ -1.63
COL4A4P53420 DHFRP3-201ENST00000455595 559 ntBASIC4.85□□□□□ -1.63
COL4A4P53420 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL4A4P53420 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.85□□□□□ -1.63
COL4A4P53420 BNIP3P19-201ENST00000605397 577 ntBASIC4.85□□□□□ -1.63
COL4A4P53420 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.85□□□□□ -1.63
COL4A4P53420 AC009120.7-201ENST00000623452 780 ntBASIC4.85□□□□□ -1.63
COL4A4P53420 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL4A4P53420 AC020656.2-201ENST00000613291 5309 ntBASIC4.85□□□□□ -1.63
COL4A4P53420 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
COL4A4P53420 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC4.85□□□□□ -1.63
COL4A4P53420 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
COL4A4P53420 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.85□□□□□ -1.63
COL4A4P53420 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL4A4P53420 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
COL4A4P53420 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
COL4A4P53420 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL4A4P53420 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.84□□□□□ -1.63
COL4A4P53420 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms