Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
SOX3P41225 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.63□□□□□ -1.67
SOX3P41225 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.63□□□□□ -1.67
SOX3P41225 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
SOX3P41225 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SOX3P41225 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.62□□□□□ -1.67
SOX3P41225 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SOX3P41225 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SOX3P41225 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SOX3P41225 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SOX3P41225 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.62□□□□□ -1.67
SOX3P41225 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.62□□□□□ -1.67
SOX3P41225 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SOX3P41225 MAPK10-349ENST00000641767 3661 ntBASIC4.62□□□□□ -1.67
SOX3P41225 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.62□□□□□ -1.67
SOX3P41225 SNORA70.10-201ENST00000384515 134 ntBASIC4.62□□□□□ -1.67
SOX3P41225 GSTA12P-201ENST00000402398 508 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AL133270.1-201ENST00000402635 279 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.62□□□□□ -1.67
SOX3P41225 OR2AM1P-201ENST00000422137 422 ntBASIC4.62□□□□□ -1.67
SOX3P41225 HSPE1P16-201ENST00000426640 348 ntBASIC4.62□□□□□ -1.67
SOX3P41225 UBE2V1P6-201ENST00000430840 422 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AL513321.1-201ENST00000441175 761 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC4.62□□□□□ -1.67
SOX3P41225 AC004980.3-201ENST00000447046 365 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AL031584.1-201ENST00000447169 754 ntBASIC4.62□□□□□ -1.67
SOX3P41225 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.62□□□□□ -1.67
SOX3P41225 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC4.62□□□□□ -1.67
SOX3P41225 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.62□□□□□ -1.67
SOX3P41225 RPS3AP41-201ENST00000462701 778 ntBASIC4.62□□□□□ -1.67
SOX3P41225 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.62□□□□□ -1.67
SOX3P41225 LARP7P4-201ENST00000481075 878 ntBASIC4.62□□□□□ -1.67
SOX3P41225 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SOX3P41225 MTND3P3-201ENST00000505004 126 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.62□□□□□ -1.67
SOX3P41225 MTCO1P31-201ENST00000506355 492 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC4.62□□□□□ -1.67
SOX3P41225 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.62□□□□□ -1.67
SOX3P41225 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC4.62□□□□□ -1.67
SOX3P41225 IGLVIV-66-1-201ENST00000521832 460 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AC012339.2-201ENST00000523996 453 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.62□□□□□ -1.67
SOX3P41225 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.62□□□□□ -1.67
SOX3P41225 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.62□□□□□ -1.67
SOX3P41225 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SOX3P41225 MIR3934-201ENST00000579806 107 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AP005262.1-201ENST00000582646 997 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AC005242.1-201ENST00000585658 438 ntBASIC4.62□□□□□ -1.67
SOX3P41225 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
SOX3P41225 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.62□□□□□ -1.67
SOX3P41225 AC006272.2-201ENST00000594725 163 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AC135178.6-201ENST00000605314 398 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AC004775.1-201ENST00000607389 753 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AL096803.3-201ENST00000609032 532 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AL049539.1-201ENST00000611964 459 ntBASIC4.62□□□□□ -1.67
SOX3P41225 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.62□□□□□ -1.67
SOX3P41225 AL391262.2-201ENST00000622466 494 ntBASIC4.62□□□□□ -1.67
SOX3P41225 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC4.62□□□□□ -1.67
SOX3P41225 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.62□□□□□ -1.67
SOX3P41225 IRF5P1-201ENST00000504852 2164 ntBASIC4.62□□□□□ -1.67
SOX3P41225 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
SOX3P41225 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
SOX3P41225 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SOX3P41225 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
SOX3P41225 AC073429.2-201ENST00000569694 1444 ntBASIC4.62□□□□□ -1.67
SOX3P41225 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SOX3P41225 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.62□□□□□ -1.67
SOX3P41225 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SOX3P41225 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.61□□□□□ -1.67
SOX3P41225 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.61□□□□□ -1.67
SOX3P41225 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
SOX3P41225 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.61□□□□□ -1.67
SOX3P41225 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
SOX3P41225 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.61□□□□□ -1.67
SOX3P41225 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SOX3P41225 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
SOX3P41225 RNA5SP105-201ENST00000391123 113 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AL021331.1-201ENST00000402817 582 ntBASIC4.61□□□□□ -1.67
SOX3P41225 PTGES3P2-201ENST00000407942 482 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.61□□□□□ -1.67
SOX3P41225 COX6B1P1-201ENST00000415962 213 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AF186996.5-201ENST00000418098 904 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC012519.1-201ENST00000424588 610 ntBASIC4.61□□□□□ -1.67
SOX3P41225 MORF4L1P7-201ENST00000426038 703 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC104837.2-201ENST00000427236 424 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.61□□□□□ -1.67
SOX3P41225 RPS29P9-201ENST00000440360 171 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.61□□□□□ -1.67
SOX3P41225 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.61□□□□□ -1.67
SOX3P41225 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.61□□□□□ -1.67
SOX3P41225 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.61□□□□□ -1.67
SOX3P41225 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.61□□□□□ -1.67
SOX3P41225 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.61□□□□□ -1.67
SOX3P41225 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.61□□□□□ -1.67
SOX3P41225 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.61□□□□□ -1.67
SOX3P41225 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.61□□□□□ -1.67
SOX3P41225 MRPS33P2-201ENST00000507850 322 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC010468.3-201ENST00000508225 458 ntBASIC4.61□□□□□ -1.67
SOX3P41225 BTG4P1-201ENST00000510421 183 ntBASIC4.61□□□□□ -1.67
SOX3P41225 BTF3P13-201ENST00000513224 490 ntBASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms