Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RNA5SP36-201ENST00000410197 133 ntBASIC5.81□□□□□ -1.48
COL18A1P39060 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL18A1P39060 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL18A1P39060 MRPL50P1-201ENST00000431951 384 ntBASIC5.81□□□□□ -1.48
COL18A1P39060 RPS29P7-201ENST00000439662 171 ntBASIC5.81□□□□□ -1.48
COL18A1P39060 AL133372.1-201ENST00000493565 745 ntBASIC5.81□□□□□ -1.48
COL18A1P39060 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.81□□□□□ -1.48
COL18A1P39060 AC127024.5-201ENST00000580085 462 ntBASIC5.81□□□□□ -1.48
COL18A1P39060 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.81□□□□□ -1.48
COL18A1P39060 MIR6875-201ENST00000617506 72 ntBASIC5.81□□□□□ -1.48
COL18A1P39060 AL356863.1-201ENST00000623378 1080 ntBASIC5.81□□□□□ -1.48
COL18A1P39060 FP325313.1-201ENST00000638228 703 ntBASIC5.81□□□□□ -1.48
COL18A1P39060 AC027228.2-201ENST00000567141 2154 ntBASIC5.81□□□□□ -1.48
COL18A1P39060 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL18A1P39060 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL18A1P39060 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL18A1P39060 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL18A1P39060 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL18A1P39060 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COL18A1P39060 SNORA71.3-201ENST00000362582 128 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL18A1P39060 MIR554-201ENST00000384874 96 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 ATP5F1P3-201ENST00000397213 657 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 EI24P3-201ENST00000399046 1062 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 AL590806.1-201ENST00000415818 853 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC5.8□□□□□ -1.48
COL18A1P39060 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.8□□□□□ -1.48
COL18A1P39060 AC091959.2-201ENST00000477363 321 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 AC023632.4-201ENST00000517783 191 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.8□□□□□ -1.48
COL18A1P39060 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.8□□□□□ -1.48
COL18A1P39060 AC005034.4-201ENST00000603612 899 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 AP002360.3-201ENST00000607673 710 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL18A1P39060 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.8□□□□□ -1.48
COL18A1P39060 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.8□□□□□ -1.48
COL18A1P39060 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL18A1P39060 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL18A1P39060 AL355852.1-201ENST00000454081 1771 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL18A1P39060 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL18A1P39060 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL18A1P39060 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL18A1P39060 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC5.8□□□□□ -1.48
COL18A1P39060 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.8□□□□□ -1.48
COL18A1P39060 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL18A1P39060 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
COL18A1P39060 MIR670-201ENST00000390142 98 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 AL035696.2-201ENST00000407941 709 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 RNU6-628P-201ENST00000410675 107 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.8□□□□□ -1.48
COL18A1P39060 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
COL18A1P39060 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.8□□□□□ -1.48
COL18A1P39060 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.8□□□□□ -1.48
COL18A1P39060 AC004777.1-201ENST00000624317 287 ntBASIC5.8□□□□□ -1.48
COL18A1P39060 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL18A1P39060 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.8□□□□□ -1.48
COL18A1P39060 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
COL18A1P39060 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL18A1P39060 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL18A1P39060 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL18A1P39060 AL022323.4-201ENST00000623980 13120 ntBASIC5.79□□□□□ -1.48
COL18A1P39060 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL18A1P39060 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.79□□□□□ -1.48
COL18A1P39060 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.79□□□□□ -1.48
COL18A1P39060 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL18A1P39060 RPL6P29-201ENST00000414863 865 ntBASIC5.79□□□□□ -1.48
COL18A1P39060 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.79□□□□□ -1.48
COL18A1P39060 AC004938.1-201ENST00000438468 308 ntBASIC5.79□□□□□ -1.48
COL18A1P39060 AL162151.2-201ENST00000448875 158 ntBASIC5.79□□□□□ -1.48
COL18A1P39060 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC5.79□□□□□ -1.48
COL18A1P39060 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5.79□□□□□ -1.48
COL18A1P39060 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.79□□□□□ -1.48
COL18A1P39060 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.79□□□□□ -1.48
COL18A1P39060 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC5.79□□□□□ -1.48
COL18A1P39060 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.79□□□□□ -1.48
COL18A1P39060 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.79□□□□□ -1.48
COL18A1P39060 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
COL18A1P39060 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL18A1P39060 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL18A1P39060 AL137141.1-201ENST00000624622 4836 ntBASIC5.79□□□□□ -1.48
COL18A1P39060 AL603750.1-201ENST00000624216 1717 ntBASIC5.79□□□□□ -1.48
COL18A1P39060 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
COL18A1P39060 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL18A1P39060 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL18A1P39060 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.78□□□□□ -1.48
COL18A1P39060 MT-RNR1-201ENST00000389680 954 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 AL691449.1-201ENST00000426570 421 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 AL445584.1-201ENST00000431451 330 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 AC009963.4-201ENST00000448535 339 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 RPS20P4-201ENST00000461659 355 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 RPL23AP2-201ENST00000471227 466 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.78□□□□□ -1.48
COL18A1P39060 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC5.78□□□□□ -1.48
COL18A1P39060 AC053481.4-201ENST00000583164 216 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 AC112484.5-201ENST00000624189 228 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.78□□□□□ -1.48
COL18A1P39060 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.78□□□□□ -1.48
COL18A1P39060 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms