Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXA3O43365 IGHV3-32-201ENST00000519182 355 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.14□□□□□ -1.59
HOXA3O43365 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA3O43365 AP004609.2-201ENST00000532177 190 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 MYL2-203ENST00000548438 664 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA3O43365 CR383656.6-201ENST00000550518 394 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 EEF1B2P4-201ENST00000551398 348 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXA3O43365 AC084757.1-201ENST00000559987 490 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 AC009063.1-201ENST00000563342 702 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.14□□□□□ -1.59
HOXA3O43365 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC5.14□□□□□ -1.59
HOXA3O43365 AC090751.1-201ENST00000566966 267 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 MRPS21P8-201ENST00000569196 235 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXA3O43365 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.14□□□□□ -1.59
HOXA3O43365 MIR548AB-201ENST00000584917 84 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 AC067852.5-201ENST00000589299 310 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.14□□□□□ -1.59
HOXA3O43365 AL157899.1-201ENST00000604110 936 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 AP001437.1-201ENST00000608783 456 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 AC016769.4-201ENST00000616893 535 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 OR11H2-202ENST00000641517 1085 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 AC073365.1-203ENST00000641055 1992 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.14□□□□□ -1.59
HOXA3O43365 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC5.14□□□□□ -1.59
HOXA3O43365 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC5.14□□□□□ -1.59
HOXA3O43365 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.14□□□□□ -1.59
HOXA3O43365 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC5.14□□□□□ -1.59
HOXA3O43365 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXA3O43365 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.14□□□□□ -1.59
HOXA3O43365 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
HOXA3O43365 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
HOXA3O43365 AL136531.3-201ENST00000624378 3658 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
HOXA3O43365 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
HOXA3O43365 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA3O43365 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXA3O43365 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA3O43365 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA3O43365 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA3O43365 BTK-209ENST00000618050 2417 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXA3O43365 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA3O43365 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA3O43365 AC007485.2-201ENST00000623493 1667 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AC103591.2-201ENST00000265259 766 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXA3O43365 RNU5F-7P-201ENST00000363696 115 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA3O43365 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA3O43365 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA3O43365 SNORD116-23-201ENST00000384645 92 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
HOXA3O43365 EI24P3-201ENST00000399046 1062 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXA3O43365 AL513325.1-201ENST00000417716 1034 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 BOLA3P4-201ENST00000418151 400 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 DPPA2P1-201ENST00000428060 556 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA3O43365 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA3O43365 IGLV3-4-201ENST00000432300 244 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AC112492.2-201ENST00000432774 1030 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AL512593.1-201ENST00000444758 779 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AL590004.3-202ENST00000445883 451 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA3O43365 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA3O43365 AC112206.1-201ENST00000468416 477 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 MTCO3P38-201ENST00000468910 766 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 RPL23AP64-201ENST00000469465 435 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AC096741.1-201ENST00000472250 846 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 RN7SL369P-201ENST00000477138 299 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 TMED11P-201ENST00000479478 690 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC5.13□□□□□ -1.59
HOXA3O43365 AC108078.3-201ENST00000502633 489 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 SUMO2P4-201ENST00000504193 276 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA3O43365 AC116353.2-201ENST00000505332 712 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 SNX5P1-201ENST00000505757 1041 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXA3O43365 AC109464.2-201ENST00000510242 943 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA3O43365 MTCO1P30-201ENST00000515244 580 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AC092709.1-201ENST00000521355 1045 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA3O43365 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXA3O43365 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXA3O43365 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC5.13□□□□□ -1.59
HOXA3O43365 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA3O43365 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXA3O43365 RN7SL475P-201ENST00000583379 298 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AL137072.1-201ENST00000603444 466 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AC107214.2-201ENST00000608204 634 ntBASIC5.13□□□□□ -1.59
HOXA3O43365 AC006566.1-201ENST00000608943 513 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms