Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MIR620-201ENST00000385232 95 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC009804.1-201ENST00000400949 179 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 RSL24D1P1-201ENST00000404972 493 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AL445183.3-201ENST00000414168 502 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AL160175.1-201ENST00000428124 247 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 BX842559.2-201ENST00000451418 605 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC002553.2-201ENST00000453217 340 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC107015.1-201ENST00000466902 747 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 TSACC-207ENST00000470342 601 ntTSL 2 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC005412.2-201ENST00000492004 341 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 OR5H3P-201ENST00000502817 919 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC133963.2-201ENST00000513686 578 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 MTCO3P27-201ENST00000514397 196 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 RN7SKP157-201ENST00000516174 282 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 HMGB1P40-201ENST00000525121 540 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 OR8A2P-201ENST00000528631 952 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 CD69-203ENST00000536709 1020 ntTSL 2 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 DPRXP4-201ENST00000578053 568 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 FKBP1AP1-201ENST00000594588 318 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC013244.1-201ENST00000604279 193 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC034236.3-201ENST00000605999 461 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC025175.1-201ENST00000606482 759 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC010245.2-201ENST00000606908 1167 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC018645.2-201ENST00000609151 472 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC016957.2-201ENST00000616998 848 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AL122125.1-201ENST00000616999 600 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC008115.4-201ENST00000619780 775 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 MTND4P9-201ENST00000507819 1346 ntBASIC4.44□□□□□ -1.7
NKX3-1Q99801 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC092747.4-201ENST00000620519 1861 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 SALL4P2-201ENST00000423288 2910 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
NKX3-1Q99801 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC005294.1-201ENST00000355509 281 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 RNA5SP90-201ENST00000364801 99 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 RNU1-149P-201ENST00000390870 161 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 RPL5P19-201ENST00000404228 893 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 STAT4-203ENST00000409995 709 ntTSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 RN7SKP97-201ENST00000410966 333 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 MTND2P15-201ENST00000418575 892 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC013429.2-201ENST00000418798 781 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 AL606495.1-201ENST00000422100 813 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 EI24P4-201ENST00000423683 1078 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 NANOGP4-201ENST00000427230 913 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 HMGB3P10-201ENST00000434734 572 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 AL096829.2-201ENST00000446582 742 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 MYO5BP2-201ENST00000449815 1277 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 CLIC4P1-201ENST00000453177 535 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC079168.1-201ENST00000458741 345 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 ATP5G1P3-201ENST00000463301 410 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 CYCSP20-201ENST00000473154 315 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 RPS4XP1-201ENST00000482189 787 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC006427.1-201ENST00000514359 712 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC027308.1-201ENST00000517993 110 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 131.6 ms