Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GARSP1-201ENST00000570895 719 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 TXNP4-201ENST00000575018 310 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 VN1R88P-201ENST00000596787 292 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 AP000403.1-201ENST00000603349 851 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 AC011451.2-201ENST00000604303 598 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 HMGB1P51-201ENST00000605166 638 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 RN7SKP299-201ENST00000606679 301 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 AL135786.2-201ENST00000608422 615 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
USP39Q53GS9 AC121761.2-201ENST00000617300 689 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 AC022079.2-201ENST00000619739 566 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.85□□□□□ -1.47
USP39Q53GS9 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.85□□□□□ -1.47
USP39Q53GS9 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
USP39Q53GS9 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
USP39Q53GS9 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.85□□□□□ -1.47
USP39Q53GS9 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
USP39Q53GS9 AL592429.1-201ENST00000403909 1473 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AC114786.1-201ENST00000512892 1415 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC5.84□□□□□ -1.47
USP39Q53GS9 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 OR5H15-201ENST00000383696 930 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 RNU6-171P-201ENST00000384354 107 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 RNU6-83P-201ENST00000384568 112 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 MYL6P5-201ENST00000412707 459 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC5.84□□□□□ -1.47
USP39Q53GS9 MTCO1P45-201ENST00000431457 267 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 USP24P1-201ENST00000433802 779 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AC000041.1-201ENST00000439655 175 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 AL390119.1-201ENST00000440329 312 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.84□□□□□ -1.47
USP39Q53GS9 CYCSP51-201ENST00000443545 318 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 RNF148-202ENST00000447240 839 ntTSL 2 BASIC5.84□□□□□ -1.47
USP39Q53GS9 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC5.84□□□□□ -1.47
USP39Q53GS9 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC5.84□□□□□ -1.47
USP39Q53GS9 AL133477.1-201ENST00000457472 514 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
USP39Q53GS9 RN7SL547P-201ENST00000490793 290 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 RNU6-720P-201ENST00000516363 108 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 RNA5SP92-201ENST00000516437 110 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AC060788.1-201ENST00000521318 469 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 BUD31P1-201ENST00000521828 359 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.84□□□□□ -1.47
USP39Q53GS9 ERP27-202ENST00000540097 993 ntTSL 2 BASIC5.84□□□□□ -1.47
USP39Q53GS9 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.84□□□□□ -1.47
USP39Q53GS9 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC5.84□□□□□ -1.47
USP39Q53GS9 DPPA2P4-201ENST00000563717 878 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AC023813.2-201ENST00000564321 469 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.84□□□□□ -1.47
USP39Q53GS9 MIR4719-201ENST00000585233 84 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC5.84□□□□□ -1.47
USP39Q53GS9 AC073648.5-201ENST00000603502 305 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 QTRT1P1-201ENST00000604344 1078 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AC080013.4-201ENST00000607624 649 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC5.84□□□□□ -1.47
USP39Q53GS9 uc_338.26-201ENST00000612659 160 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 AL352984.2-202ENST00000613699 155 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AL138960.1-201ENST00000613838 513 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AC025588.4-201ENST00000615802 908 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC5.84□□□□□ -1.47
USP39Q53GS9 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 AC005840.5-201ENST00000619166 599 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AC099842.1-201ENST00000619919 596 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AC079248.2-201ENST00000623779 326 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 AC007490.1-201ENST00000624321 703 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.84□□□□□ -1.47
USP39Q53GS9 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.84□□□□□ -1.47
USP39Q53GS9 OR11H2-202ENST00000641517 1085 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.47
USP39Q53GS9 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.84□□□□□ -1.47
USP39Q53GS9 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
USP39Q53GS9 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.84□□□□□ -1.47
USP39Q53GS9 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.84□□□□□ -1.47
USP39Q53GS9 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.84□□□□□ -1.47
USP39Q53GS9 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
USP39Q53GS9 LINC02019-201ENST00000608605 2060 ntBASIC5.84□□□□□ -1.47
USP39Q53GS9 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
USP39Q53GS9 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
USP39Q53GS9 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
USP39Q53GS9 AC004656.1-201ENST00000568479 4951 ntBASIC5.84□□□□□ -1.48
USP39Q53GS9 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP39Q53GS9 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
USP39Q53GS9 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
USP39Q53GS9 BX005019.1-201ENST00000561881 1810 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
USP39Q53GS9 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
USP39Q53GS9 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
USP39Q53GS9 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.83□□□□□ -1.48
USP39Q53GS9 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms