Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SUGT1P1-201ENST00000379514 476 ntBASIC6.06□□□□□ -1.44
RNF4P78317 RNU6-761P-201ENST00000384148 107 ntBASIC6.06□□□□□ -1.44
RNF4P78317 SNORD116-23-201ENST00000384645 92 ntBASIC6.06□□□□□ -1.44
RNF4P78317 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
RNF4P78317 OR2W4P-201ENST00000406496 926 ntBASIC6.06□□□□□ -1.44
RNF4P78317 RN7SKP108-201ENST00000411367 328 ntBASIC6.06□□□□□ -1.44
RNF4P78317 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC6.06□□□□□ -1.44
RNF4P78317 AL136133.1-201ENST00000413694 376 ntBASIC6.06□□□□□ -1.44
RNF4P78317 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
RNF4P78317 RPL7AP14-201ENST00000424041 802 ntBASIC6.06□□□□□ -1.44
RNF4P78317 AC005033.1-201ENST00000428904 813 ntBASIC6.06□□□□□ -1.44
RNF4P78317 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC6.06□□□□□ -1.44
RNF4P78317 AC000111.3-201ENST00000433478 193 ntBASIC6.06□□□□□ -1.44
RNF4P78317 B3GNT2P1-201ENST00000434960 952 ntBASIC6.06□□□□□ -1.44
RNF4P78317 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC6.06□□□□□ -1.44
RNF4P78317 RPS7P5-201ENST00000441482 581 ntBASIC6.06□□□□□ -1.44
RNF4P78317 AC234771.2-201ENST00000445718 597 ntBASIC6.06□□□□□ -1.44
RNF4P78317 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC6.06□□□□□ -1.44
RNF4P78317 RBMY2TP-201ENST00000451162 947 ntBASIC6.06□□□□□ -1.44
RNF4P78317 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC6.06□□□□□ -1.44
RNF4P78317 RPL7P24-201ENST00000493052 752 ntBASIC6.06□□□□□ -1.44
RNF4P78317 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.06□□□□□ -1.44
RNF4P78317 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 AC092349.1-201ENST00000504903 310 ntBASIC6.06□□□□□ -1.44
RNF4P78317 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC6.06□□□□□ -1.44
RNF4P78317 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC6.06□□□□□ -1.44
RNF4P78317 AF131216.2-201ENST00000512316 564 ntBASIC6.06□□□□□ -1.44
RNF4P78317 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC6.06□□□□□ -1.44
RNF4P78317 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.06□□□□□ -1.44
RNF4P78317 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.06□□□□□ -1.44
RNF4P78317 AC091489.2-201ENST00000566263 604 ntBASIC6.06□□□□□ -1.44
RNF4P78317 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.06□□□□□ -1.44
RNF4P78317 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC6.06□□□□□ -1.44
RNF4P78317 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
RNF4P78317 AC090312.2-201ENST00000582687 378 ntBASIC6.06□□□□□ -1.44
RNF4P78317 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC6.06□□□□□ -1.44
RNF4P78317 AL953862.2-201ENST00000603089 820 ntBASIC6.06□□□□□ -1.44
RNF4P78317 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC6.06□□□□□ -1.44
RNF4P78317 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC6.06□□□□□ -1.44
RNF4P78317 Y_RNA.804-201ENST00000615262 101 ntBASIC6.06□□□□□ -1.44
RNF4P78317 AC023509.5-201ENST00000617434 807 ntBASIC6.06□□□□□ -1.44
RNF4P78317 AC018926.3-201ENST00000618841 406 ntBASIC6.06□□□□□ -1.44
RNF4P78317 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
RNF4P78317 AP001264.1-201ENST00000620602 703 ntBASIC6.06□□□□□ -1.44
RNF4P78317 MIR6823-201ENST00000622118 61 ntBASIC6.06□□□□□ -1.44
RNF4P78317 SNX18P10-201ENST00000625014 519 ntBASIC6.06□□□□□ -1.44
RNF4P78317 MIR3688-2-201ENST00000636963 87 ntBASIC6.06□□□□□ -1.44
RNF4P78317 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC6.06□□□□□ -1.44
RNF4P78317 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
RNF4P78317 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
RNF4P78317 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.06□□□□□ -1.44
RNF4P78317 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC6.06□□□□□ -1.44
RNF4P78317 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.06□□□□□ -1.44
RNF4P78317 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC6.06□□□□□ -1.44
RNF4P78317 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC6.06□□□□□ -1.44
RNF4P78317 AC119674.1-213ENST00000641177 1386 ntBASIC6.06□□□□□ -1.44
RNF4P78317 MAPK10-344ENST00000641718 3746 ntBASIC6.05□□□□□ -1.44
RNF4P78317 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.05□□□□□ -1.44
RNF4P78317 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.05□□□□□ -1.44
RNF4P78317 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
RNF4P78317 EIF3EP1-201ENST00000433978 1316 ntBASIC6.05□□□□□ -1.44
RNF4P78317 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
RNF4P78317 BTK-209ENST00000618050 2417 ntTSL 5 BASIC6.05□□□□□ -1.44
RNF4P78317 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.05□□□□□ -1.44
RNF4P78317 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.05□□□□□ -1.44
RNF4P78317 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
RNF4P78317 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.05□□□□□ -1.44
RNF4P78317 AP002001.2-201ENST00000529025 1469 ntBASIC6.05□□□□□ -1.44
RNF4P78317 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.05□□□□□ -1.44
RNF4P78317 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.05□□□□□ -1.44
RNF4P78317 RNU5E-5P-201ENST00000365379 116 ntBASIC6.05□□□□□ -1.44
RNF4P78317 OR52E6-202ENST00000379946 954 ntBASIC6.05□□□□□ -1.44
RNF4P78317 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
RNF4P78317 AC245036.1-201ENST00000391727 309 ntBASIC6.05□□□□□ -1.44
RNF4P78317 MIR1277-201ENST00000408536 78 ntBASIC6.05□□□□□ -1.44
RNF4P78317 RN7SKP129-201ENST00000410288 299 ntBASIC6.05□□□□□ -1.44
RNF4P78317 RNU6-248P-201ENST00000410720 107 ntBASIC6.05□□□□□ -1.44
RNF4P78317 HMGB1P11-201ENST00000413899 637 ntBASIC6.05□□□□□ -1.44
RNF4P78317 AL121878.1-201ENST00000418638 859 ntBASIC6.05□□□□□ -1.44
RNF4P78317 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC6.05□□□□□ -1.44
RNF4P78317 AL139158.1-201ENST00000424719 340 ntBASIC6.05□□□□□ -1.44
RNF4P78317 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.05□□□□□ -1.44
RNF4P78317 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
RNF4P78317 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.05□□□□□ -1.44
RNF4P78317 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC6.05□□□□□ -1.44
RNF4P78317 BTF3P10-201ENST00000433415 495 ntBASIC6.05□□□□□ -1.44
RNF4P78317 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC6.05□□□□□ -1.44
RNF4P78317 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
RNF4P78317 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
RNF4P78317 RPL23AP64-201ENST00000469465 435 ntBASIC6.05□□□□□ -1.44
RNF4P78317 H3F3AP3-201ENST00000497682 407 ntBASIC6.05□□□□□ -1.44
RNF4P78317 AC117522.1-201ENST00000509821 380 ntBASIC6.05□□□□□ -1.44
RNF4P78317 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms