Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC093815.1-201ENST00000508637 280 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 FTH1P21-201ENST00000512179 511 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 TRMT10BP1-201ENST00000519377 943 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.54□□□□□ -1.52
BRCA1P38398 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC5.54□□□□□ -1.52
BRCA1P38398 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC5.54□□□□□ -1.52
BRCA1P38398 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.54□□□□□ -1.52
BRCA1P38398 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC5.54□□□□□ -1.52
BRCA1P38398 RN7SL339P-201ENST00000580597 296 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 AL354984.3-201ENST00000604803 325 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 MIR6875-201ENST00000617506 72 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.54□□□□□ -1.52
BRCA1P38398 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
BRCA1P38398 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
BRCA1P38398 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
BRCA1P38398 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 AL391684.1-202ENST00000641293 1636 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
BRCA1P38398 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
BRCA1P38398 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
BRCA1P38398 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
BRCA1P38398 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
BRCA1P38398 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
BRCA1P38398 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.54□□□□□ -1.52
BRCA1P38398 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.54□□□□□ -1.52
BRCA1P38398 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
BRCA1P38398 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
BRCA1P38398 MIR331-201ENST00000362302 94 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 RNA5SP372-201ENST00000390836 115 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 AL117339.2-201ENST00000430475 180 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC5.54□□□□□ -1.52
BRCA1P38398 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.54□□□□□ -1.52
BRCA1P38398 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
BRCA1P38398 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
BRCA1P38398 OR7E10P-201ENST00000526420 991 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 OR4A2P-201ENST00000527276 913 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 OR5BC1P-201ENST00000529327 739 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.54□□□□□ -1.52
BRCA1P38398 RNU4-89P-201ENST00000607443 133 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.54□□□□□ -1.52
BRCA1P38398 MIR8059-201ENST00000620427 81 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.53□□□□□ -1.52
BRCA1P38398 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
BRCA1P38398 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
BRCA1P38398 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
BRCA1P38398 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
BRCA1P38398 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
BRCA1P38398 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
BRCA1P38398 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.53□□□□□ -1.52
BRCA1P38398 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
BRCA1P38398 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
BRCA1P38398 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
BRCA1P38398 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
BRCA1P38398 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
BRCA1P38398 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
BRCA1P38398 DHX9P1-201ENST00000436565 3076 ntBASIC5.53□□□□□ -1.52
BRCA1P38398 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.53□□□□□ -1.52
BRCA1P38398 U3.35-201ENST00000408405 208 ntBASIC5.53□□□□□ -1.52
BRCA1P38398 GOT2P5-201ENST00000433995 546 ntBASIC5.53□□□□□ -1.52
BRCA1P38398 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.53□□□□□ -1.52
BRCA1P38398 AC016559.2-201ENST00000510759 359 ntBASIC5.53□□□□□ -1.52
BRCA1P38398 SNORA74D-201ENST00000516404 141 ntBASIC5.53□□□□□ -1.52
BRCA1P38398 SCARNA13-201ENST00000516672 275 ntBASIC5.53□□□□□ -1.52
BRCA1P38398 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
BRCA1P38398 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
BRCA1P38398 AL034370.1-201ENST00000397254 1590 ntBASIC5.53□□□□□ -1.52
BRCA1P38398 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
BRCA1P38398 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.52□□□□□ -1.52
BRCA1P38398 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
BRCA1P38398 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
BRCA1P38398 RNA5SP453-201ENST00000362503 119 ntBASIC5.52□□□□□ -1.53
BRCA1P38398 RPL21P67-201ENST00000402896 478 ntBASIC5.52□□□□□ -1.53
BRCA1P38398 AC092162.1-201ENST00000432828 434 ntBASIC5.52□□□□□ -1.53
BRCA1P38398 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.52□□□□□ -1.53
BRCA1P38398 AC111000.6-201ENST00000514471 709 ntBASIC5.52□□□□□ -1.53
BRCA1P38398 AC105233.3-201ENST00000531125 744 ntBASIC5.52□□□□□ -1.53
BRCA1P38398 AGGF1P6-201ENST00000569213 976 ntBASIC5.52□□□□□ -1.53
BRCA1P38398 AC053481.4-201ENST00000583164 216 ntBASIC5.52□□□□□ -1.53
BRCA1P38398 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.52□□□□□ -1.53
BRCA1P38398 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC5.52□□□□□ -1.53
BRCA1P38398 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.52□□□□□ -1.53
BRCA1P38398 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
BRCA1P38398 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
BRCA1P38398 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
BRCA1P38398 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
BRCA1P38398 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
BRCA1P38398 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
BRCA1P38398 AC027228.2-201ENST00000567141 2154 ntBASIC5.52□□□□□ -1.53
BRCA1P38398 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC5.52□□□□□ -1.53
BRCA1P38398 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.52□□□□□ -1.53
BRCA1P38398 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
BRCA1P38398 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.51□□□□□ -1.53
BRCA1P38398 Y_RNA.333-201ENST00000365274 102 ntBASIC5.51□□□□□ -1.53
BRCA1P38398 PTMAP2-201ENST00000397627 327 ntBASIC5.51□□□□□ -1.53
BRCA1P38398 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
BRCA1P38398 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
BRCA1P38398 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.51□□□□□ -1.53
BRCA1P38398 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
BRCA1P38398 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms