Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL356968.1-201ENST00000416622 474 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 AC062016.2-201ENST00000420950 676 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 HSPE1P1-201ENST00000421494 318 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 LINC00575-201ENST00000426551 910 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 AL589872.1-201ENST00000426602 288 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.32□□□□□ -1.4
COL8A1P27658 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC6.32□□□□□ -1.4
COL8A1P27658 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC6.32□□□□□ -1.4
COL8A1P27658 AC114488.2-222ENST00000445166 362 ntTSL 3 BASIC6.32□□□□□ -1.4
COL8A1P27658 RPL7L1P11-201ENST00000446092 721 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 AC093166.3-201ENST00000448785 303 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 RPL7P52-201ENST00000449200 742 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC6.32□□□□□ -1.4
COL8A1P27658 AC103563.5-201ENST00000455643 364 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 GAPDHP53-201ENST00000458397 924 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC6.32□□□□□ -1.4
COL8A1P27658 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC6.32□□□□□ -1.4
COL8A1P27658 AC073522.1-201ENST00000483312 377 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 AC006390.1-201ENST00000508068 283 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 AC083923.1-201ENST00000523708 376 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 AC010247.1-201ENST00000527895 759 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC6.32□□□□□ -1.4
COL8A1P27658 DCN-210ENST00000547568 823 ntTSL 3 BASIC6.32□□□□□ -1.4
COL8A1P27658 AL049870.4-201ENST00000555741 486 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.32□□□□□ -1.4
COL8A1P27658 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC6.32□□□□□ -1.4
COL8A1P27658 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.32□□□□□ -1.4
COL8A1P27658 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC6.32□□□□□ -1.4
COL8A1P27658 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.32□□□□□ -1.4
COL8A1P27658 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 AC022400.9-201ENST00000623633 273 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC6.32□□□□□ -1.4
COL8A1P27658 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC6.32□□□□□ -1.4
COL8A1P27658 PIAS1-201ENST00000249636 8115 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 CDR1-202ENST00000625883 1485 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 MID1-212ENST00000616003 1926 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC6.32□□□□□ -1.4
COL8A1P27658 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 EPHA4-201ENST00000281821 6346 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC6.32□□□□□ -1.4
COL8A1P27658 AL353753.1-201ENST00000612217 2320 ntTSL 2 BASIC6.32□□□□□ -1.4
COL8A1P27658 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
COL8A1P27658 AC119674.1-202ENST00000641333 1860 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 HLF-210ENST00000575345 3589 ntTSL 2 BASIC6.32□□□□□ -1.4
COL8A1P27658 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC6.32□□□□□ -1.4
COL8A1P27658 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
COL8A1P27658 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC6.31□□□□□ -1.4
COL8A1P27658 SLFN13-209ENST00000533791 4121 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
COL8A1P27658 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
COL8A1P27658 PTBP2-203ENST00000426398 3027 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 AC008676.2-202ENST00000509655 1992 ntTSL 2 BASIC6.31□□□□□ -1.4
COL8A1P27658 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC6.31□□□□□ -1.4
COL8A1P27658 BTK-201ENST00000308731 2579 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 IL12B-201ENST00000231228 2761 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 CACNA1D-219ENST00000636938 6868 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
COL8A1P27658 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 AC012213.2-201ENST00000562917 4597 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
COL8A1P27658 BCL6-201ENST00000232014 2710 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 MAP4-210ENST00000439356 2743 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 AC245505.2-201ENST00000553572 3055 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 SLC16A4-210ENST00000541986 2496 ntTSL 2 BASIC6.31□□□□□ -1.4
COL8A1P27658 AC006378.2-201ENST00000623178 2476 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 LRRC2-AS1-201ENST00000599511 2291 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AC096992.2-201ENST00000609553 1684 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 RNU6-1032P-201ENST00000384100 107 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 MIR498-201ENST00000385134 124 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 ATP5HP3-201ENST00000396994 486 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC6.31□□□□□ -1.4
COL8A1P27658 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC6.31□□□□□ -1.4
COL8A1P27658 Z93019.1-201ENST00000416450 973 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC6.31□□□□□ -1.4
COL8A1P27658 AC244505.2-201ENST00000435089 759 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AC009237.4-201ENST00000441078 238 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC6.31□□□□□ -1.4
COL8A1P27658 RN7SL706P-201ENST00000460079 292 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AC090589.1-201ENST00000473109 362 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AC078785.3-201ENST00000476607 425 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC6.31□□□□□ -1.4
COL8A1P27658 DCAF13P2-201ENST00000514188 555 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 RNU6-635P-201ENST00000516651 102 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 IGKV2D-38-201ENST00000518423 240 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 IGKV2-29-201ENST00000521304 372 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 KCTD9P6-201ENST00000522306 950 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 GLYATL1P4-201ENST00000529326 906 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AC013828.2-201ENST00000532487 235 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC6.31□□□□□ -1.4
COL8A1P27658 AC068305.2-201ENST00000550567 1205 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC6.31□□□□□ -1.4
COL8A1P27658 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC6.31□□□□□ -1.4
COL8A1P27658 AL031846.1-201ENST00000560933 314 ntBASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms