Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
SDC1P18827 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.5□□□□□ -1.69
SDC1P18827 OR2AM1P-201ENST00000422137 422 ntBASIC4.5□□□□□ -1.69
SDC1P18827 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SDC1P18827 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.5□□□□□ -1.69
SDC1P18827 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.5□□□□□ -1.69
SDC1P18827 AC114878.1-201ENST00000441166 358 ntBASIC4.5□□□□□ -1.69
SDC1P18827 AC079168.2-201ENST00000453977 416 ntBASIC4.5□□□□□ -1.69
SDC1P18827 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.5□□□□□ -1.69
SDC1P18827 RPSAP50-201ENST00000481955 852 ntBASIC4.5□□□□□ -1.69
SDC1P18827 RN7SL214P-201ENST00000487317 265 ntBASIC4.5□□□□□ -1.69
SDC1P18827 AC104971.1-201ENST00000495117 578 ntBASIC4.5□□□□□ -1.69
SDC1P18827 AC093890.1-201ENST00000502554 540 ntBASIC4.5□□□□□ -1.69
SDC1P18827 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SDC1P18827 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.5□□□□□ -1.69
SDC1P18827 BTF3P13-201ENST00000513224 490 ntBASIC4.5□□□□□ -1.69
SDC1P18827 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
SDC1P18827 RNU1-6P-201ENST00000516290 144 ntBASIC4.5□□□□□ -1.69
SDC1P18827 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.5□□□□□ -1.69
SDC1P18827 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.5□□□□□ -1.69
SDC1P18827 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SDC1P18827 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC4.5□□□□□ -1.69
SDC1P18827 AC209154.1-201ENST00000582156 337 ntBASIC4.5□□□□□ -1.69
SDC1P18827 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC4.5□□□□□ -1.69
SDC1P18827 AC005520.3-201ENST00000602874 370 ntBASIC4.5□□□□□ -1.69
SDC1P18827 FAM27B-201ENST00000610601 213 ntBASIC4.5□□□□□ -1.69
SDC1P18827 AL118556.2-201ENST00000614375 824 ntBASIC4.5□□□□□ -1.69
SDC1P18827 AC005086.4-201ENST00000623065 213 ntBASIC4.5□□□□□ -1.69
SDC1P18827 AC091905.4-201ENST00000623432 202 ntBASIC4.5□□□□□ -1.69
SDC1P18827 AP002799.1-201ENST00000623552 423 ntBASIC4.5□□□□□ -1.69
SDC1P18827 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SDC1P18827 AC011815.3-201ENST00000624194 473 ntBASIC4.5□□□□□ -1.69
SDC1P18827 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SDC1P18827 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SDC1P18827 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
SDC1P18827 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
SDC1P18827 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
SDC1P18827 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.49□□□□□ -1.69
SDC1P18827 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDC1P18827 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.49□□□□□ -1.69
SDC1P18827 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.49□□□□□ -1.69
SDC1P18827 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
SDC1P18827 ZFRP1-201ENST00000457579 2970 ntBASIC4.49□□□□□ -1.69
SDC1P18827 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDC1P18827 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDC1P18827 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDC1P18827 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDC1P18827 RN7SKP104-201ENST00000362605 328 ntBASIC4.49□□□□□ -1.69
SDC1P18827 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
SDC1P18827 ST13P16-201ENST00000401760 781 ntBASIC4.49□□□□□ -1.69
SDC1P18827 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.49□□□□□ -1.69
SDC1P18827 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.49□□□□□ -1.69
SDC1P18827 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.49□□□□□ -1.69
SDC1P18827 RBMY2QP-201ENST00000429799 1147 ntBASIC4.49□□□□□ -1.69
SDC1P18827 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.49□□□□□ -1.69
SDC1P18827 RSL24D1P8-201ENST00000434442 492 ntBASIC4.49□□□□□ -1.69
SDC1P18827 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.49□□□□□ -1.69
SDC1P18827 PRPF38AP2-201ENST00000438179 851 ntBASIC4.49□□□□□ -1.69
SDC1P18827 ARL5AP3-201ENST00000439327 386 ntBASIC4.49□□□□□ -1.69
SDC1P18827 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.49□□□□□ -1.69
SDC1P18827 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.49□□□□□ -1.69
SDC1P18827 snoU13.20-201ENST00000459180 104 ntBASIC4.49□□□□□ -1.69
SDC1P18827 STRADBP1-201ENST00000478954 1281 ntBASIC4.49□□□□□ -1.69
SDC1P18827 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC4.49□□□□□ -1.69
SDC1P18827 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SDC1P18827 AC093763.2-201ENST00000505334 1223 ntBASIC4.49□□□□□ -1.69
SDC1P18827 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.49□□□□□ -1.69
SDC1P18827 IGHVIII-67-4-201ENST00000524281 296 ntBASIC4.49□□□□□ -1.69
SDC1P18827 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.49□□□□□ -1.69
SDC1P18827 AC092868.3-201ENST00000560515 784 ntBASIC4.49□□□□□ -1.69
SDC1P18827 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.49□□□□□ -1.69
SDC1P18827 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.49□□□□□ -1.69
SDC1P18827 AC073137.1-201ENST00000605636 634 ntBASIC4.49□□□□□ -1.69
SDC1P18827 MIR6862-1-201ENST00000613016 70 ntBASIC4.49□□□□□ -1.69
SDC1P18827 AL512624.1-201ENST00000613638 469 ntBASIC4.49□□□□□ -1.69
SDC1P18827 MIR6862-2-201ENST00000614755 70 ntBASIC4.49□□□□□ -1.69
SDC1P18827 AC009032.1-201ENST00000617574 431 ntBASIC4.49□□□□□ -1.69
SDC1P18827 MIR6729-201ENST00000618194 65 ntBASIC4.49□□□□□ -1.69
SDC1P18827 AC119674.1-220ENST00000641502 1048 ntBASIC4.49□□□□□ -1.69
SDC1P18827 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.49□□□□□ -1.69
SDC1P18827 BTBD10P1-201ENST00000549824 1352 ntBASIC4.49□□□□□ -1.69
SDC1P18827 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.49□□□□□ -1.69
SDC1P18827 AC007382.1-201ENST00000624376 2618 ntBASIC4.49□□□□□ -1.69
SDC1P18827 AL442639.1-201ENST00000625030 1899 ntBASIC4.49□□□□□ -1.69
SDC1P18827 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.49□□□□□ -1.69
SDC1P18827 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDC1P18827 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDC1P18827 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.49□□□□□ -1.69
SDC1P18827 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDC1P18827 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.49□□□□□ -1.69
SDC1P18827 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.48□□□□□ -1.69
SDC1P18827 TTC39DP-201ENST00000416781 1688 ntBASIC4.48□□□□□ -1.69
SDC1P18827 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.48□□□□□ -1.69
SDC1P18827 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
SDC1P18827 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.48□□□□□ -1.69
SDC1P18827 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SDC1P18827 AC010132.2-201ENST00000295493 1043 ntBASIC4.48□□□□□ -1.69
SDC1P18827 OR56B2P-201ENST00000317102 954 ntBASIC4.48□□□□□ -1.69
SDC1P18827 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.48□□□□□ -1.69
SDC1P18827 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms