Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
HOXC4P09017 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC4P09017 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC4P09017 KARSP3-201ENST00000571212 1504 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.63□□□□□ -1.67
HOXC4P09017 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC4P09017 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC4P09017 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC4P09017 GLULP6-201ENST00000399502 913 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 ARL4AP5-201ENST00000404372 599 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 AL035696.2-201ENST00000407941 709 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 RNU2-22P-201ENST00000411266 212 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXC4P09017 RGS17P1-201ENST00000423358 553 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 EIF4HP2-201ENST00000424380 563 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 AC012519.1-201ENST00000424588 610 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXC4P09017 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXC4P09017 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXC4P09017 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXC4P09017 AC002553.2-201ENST00000453217 340 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 snoU13.1-201ENST00000459157 104 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXC4P09017 RPL21P6-201ENST00000479171 504 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 RPL36AP41-201ENST00000493820 306 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 AC111000.3-201ENST00000508057 576 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 HIGD1AP5-201ENST00000529959 259 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXC4P09017 AP005119.2-201ENST00000579735 1105 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXC4P09017 OR7A19P-201ENST00000608051 733 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 AC245100.2-201ENST00000454544 1679 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
HOXC4P09017 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC4P09017 CASC19-204ENST00000641001 2055 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
HOXC4P09017 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
HOXC4P09017 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXC4P09017 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
HOXC4P09017 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC4P09017 AC120338.1-201ENST00000625074 1541 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC4P09017 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.62□□□□□ -1.67
HOXC4P09017 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC4P09017 AC112198.2-201ENST00000426589 6996 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC4P09017 AC000123.3-201ENST00000624029 4975 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.62□□□□□ -1.67
HOXC4P09017 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC4P09017 AC008549.2-201ENST00000333482 706 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC4P09017 MIR129-1-201ENST00000384972 72 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
HOXC4P09017 RNA5SP332-201ENST00000391063 115 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC4P09017 VDAC2P1-201ENST00000399358 958 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
HOXC4P09017 AL589994.1-201ENST00000404962 340 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.62□□□□□ -1.67
HOXC4P09017 RPL7P57-201ENST00000423238 740 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.62□□□□□ -1.67
HOXC4P09017 DNAJC19P7-201ENST00000428811 344 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 RPL23AP1-201ENST00000428990 471 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 CNOT7P1-201ENST00000429006 852 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 AC004938.1-201ENST00000438468 308 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC4P09017 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 RN7SL354P-201ENST00000469282 294 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 OR52A4P-201ENST00000472867 958 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 RN7SL481P-201ENST00000477764 299 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC4P09017 RNA5SP249-201ENST00000516127 99 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 RNA5SP464-201ENST00000516251 108 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.62□□□□□ -1.67
HOXC4P09017 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC4P09017 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXC4P09017 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC4.62□□□□□ -1.67
HOXC4P09017 AC020915.5-201ENST00000596836 964 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXC4P09017 QTRT1P1-201ENST00000604344 1078 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 AC073137.1-201ENST00000605636 634 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXC4P09017 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
HOXC4P09017 U3.53-201ENST00000628922 216 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXC4P09017 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXC4P09017 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC4P09017 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC4P09017 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
HOXC4P09017 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
HOXC4P09017 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC4P09017 Z98755.1-201ENST00000407015 1384 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 AL031119.1-201ENST00000404707 1879 ntBASIC4.62□□□□□ -1.67
HOXC4P09017 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.62□□□□□ -1.67
HOXC4P09017 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC4P09017 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
HOXC4P09017 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms