Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 MIR550A3-201ENST00000390735 95 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AP002530.1-201ENST00000405705 684 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AF186996.5-201ENST00000418098 904 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AL354692.1-201ENST00000423044 315 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 PRPF38AP2-201ENST00000438179 851 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 PA2G4P6-201ENST00000438325 1197 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 RPS29P9-201ENST00000440360 171 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 TXNP5-201ENST00000441043 315 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 RN7SL441P-201ENST00000492388 296 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AC119751.4-201ENST00000507498 357 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AC010374.2-201ENST00000512933 535 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 MTATP6P9-201ENST00000515039 680 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AL671862.1-201ENST00000515851 349 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 CKS1BP1-201ENST00000555221 240 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AC011487.3-201ENST00000593607 453 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AL391834.1-201ENST00000609609 560 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AC112694.2-201ENST00000623697 768 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 TRIM51GP-201ENST00000534741 1350 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AC093591.2-201ENST00000565254 3843 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 SNORD51.1-201ENST00000365405 77 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 ATP5HP3-201ENST00000396994 486 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 SNORA11B-201ENST00000408175 129 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 CTSL3P-202ENST00000412179 788 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 COX5BP7-201ENST00000414780 274 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 RPS26P13-201ENST00000419030 330 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 Z99127.2-201ENST00000441426 334 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 XKRY2-201ENST00000442362 1093 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AL645937.3-201ENST00000453647 936 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 HMGB1P4-201ENST00000455362 567 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 HSPE1P22-201ENST00000456856 327 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 NPM1P29-201ENST00000483112 803 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AL049874.2-201ENST00000492636 288 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 MRPS33P2-201ENST00000507850 322 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 SEC11B-201ENST00000518383 499 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AP001922.4-201ENST00000526967 290 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 BNIP3P31-201ENST00000604515 566 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AC005377.1-201ENST00000605126 456 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AC018695.5-201ENST00000605872 315 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AL450270.1-201ENST00000606160 391 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 MKKS-203ENST00000609375 882 ntTSL 2 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AL445493.3-201ENST00000619568 477 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AL445528.2-201ENST00000620582 470 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AP003499.2-201ENST00000624100 483 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 FRG1EP-201ENST00000634469 770 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 RBPJP2-201ENST00000618187 1444 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SNX9Q9Y5X1 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms