Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
NUP88Q99567 AC003973.3-201ENST00000624863 2822 ntBASIC6.21□□□□□ -1.42
NUP88Q99567 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
NUP88Q99567 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC6.21□□□□□ -1.42
NUP88Q99567 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
NUP88Q99567 PROS2P-201ENST00000474651 1951 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
NUP88Q99567 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
NUP88Q99567 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
NUP88Q99567 AC018628.1-201ENST00000624147 3819 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
NUP88Q99567 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC6.2□□□□□ -1.42
NUP88Q99567 ZNF849P-201ENST00000594711 1566 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
NUP88Q99567 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
NUP88Q99567 AC092681.1-201ENST00000297369 291 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 U3.36-201ENST00000408418 213 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 AP000357.1-201ENST00000409926 1165 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 LIPT1P1-201ENST00000415870 1186 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 AC000041.1-201ENST00000439655 175 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC6.2□□□□□ -1.42
NUP88Q99567 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC6.2□□□□□ -1.42
NUP88Q99567 TRY2P-201ENST00000448860 689 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC6.2□□□□□ -1.42
NUP88Q99567 CCNB1IP1P3-201ENST00000454702 829 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
NUP88Q99567 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC6.2□□□□□ -1.42
NUP88Q99567 RPSAP51-201ENST00000497462 645 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC6.2□□□□□ -1.42
NUP88Q99567 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC6.2□□□□□ -1.42
NUP88Q99567 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC6.2□□□□□ -1.42
NUP88Q99567 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
NUP88Q99567 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC6.2□□□□□ -1.42
NUP88Q99567 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC6.2□□□□□ -1.42
NUP88Q99567 OR8G5-201ENST00000524943 1041 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 OR4A43P-201ENST00000532938 908 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC6.2□□□□□ -1.42
NUP88Q99567 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC6.2□□□□□ -1.42
NUP88Q99567 AC025260.1-201ENST00000548858 430 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
NUP88Q99567 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC6.2□□□□□ -1.42
NUP88Q99567 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6.2□□□□□ -1.42
NUP88Q99567 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC6.2□□□□□ -1.42
NUP88Q99567 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC6.2□□□□□ -1.42
NUP88Q99567 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC6.2□□□□□ -1.42
NUP88Q99567 AP002906.1-201ENST00000603405 233 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC6.2□□□□□ -1.42
NUP88Q99567 AC011374.2-201ENST00000607135 526 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 AC006946.3-201ENST00000609791 756 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC6.2□□□□□ -1.42
NUP88Q99567 AL109659.3-201ENST00000624985 950 ntBASIC6.2□□□□□ -1.42
NUP88Q99567 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC6.2□□□□□ -1.42
NUP88Q99567 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
NUP88Q99567 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
NUP88Q99567 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
NUP88Q99567 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
NUP88Q99567 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC6.2□□□□□ -1.42
NUP88Q99567 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
NUP88Q99567 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
NUP88Q99567 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
NUP88Q99567 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
NUP88Q99567 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
NUP88Q99567 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
NUP88Q99567 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
NUP88Q99567 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC6.19□□□□□ -1.42
NUP88Q99567 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.19□□□□□ -1.42
NUP88Q99567 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
NUP88Q99567 AC073429.2-201ENST00000569694 1444 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
NUP88Q99567 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
NUP88Q99567 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
NUP88Q99567 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
NUP88Q99567 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
NUP88Q99567 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
NUP88Q99567 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
NUP88Q99567 SNORA5.1-201ENST00000384275 131 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 RNU6-185P-201ENST00000384421 107 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 HSPA8P15-201ENST00000401676 786 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 RPS27AP11-201ENST00000402798 447 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 HMGB3P18-201ENST00000406327 590 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 VTA1P1-201ENST00000414044 866 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 ATP6V1G1P7-201ENST00000415853 349 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 OSTCP5-201ENST00000425293 453 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC6.19□□□□□ -1.42
NUP88Q99567 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC6.19□□□□□ -1.42
NUP88Q99567 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC6.19□□□□□ -1.42
NUP88Q99567 REG1CP-206ENST00000447469 496 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 EIF4EBP2P1-201ENST00000450009 343 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 AL035407.2-201ENST00000454090 378 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 GTF2IP12-201ENST00000456547 356 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 RPL35AP28-201ENST00000459730 331 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 RN7SL188P-201ENST00000469842 285 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 AC020898.1-201ENST00000474167 787 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC6.19□□□□□ -1.42
NUP88Q99567 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC6.19□□□□□ -1.42
NUP88Q99567 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC6.19□□□□□ -1.42
NUP88Q99567 LRRC6P1-201ENST00000532188 885 ntBASIC6.19□□□□□ -1.42
NUP88Q99567 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC6.19□□□□□ -1.42
NUP88Q99567 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC6.19□□□□□ -1.42
NUP88Q99567 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms