Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AC006210.2-201ENST00000367074 1545 ntBASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AL450326.2-201ENST00000421913 1962 ntBASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AC007563.3-201ENST00000433233 371 ntBASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AC063943.1-201ENST00000465434 453 ntBASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AC006967.1-201ENST00000467608 589 ntBASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 RN7SL319P-201ENST00000480656 221 ntBASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 ACTR6P1-201ENST00000514311 1104 ntBASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 RNA5SP43-201ENST00000516559 110 ntBASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AC104997.1-201ENST00000519761 717 ntBASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AC091042.1-201ENST00000579213 173 ntBASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AP005432.2-201ENST00000608162 586 ntBASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 AL022322.2-201ENST00000624072 20397 ntBASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.1□□□□□ -1.59
HDDC3Q8N4P3 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AC009313.2-201ENST00000417893 1941 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 BTBD10P1-201ENST00000549824 1352 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 RNA5SP505-201ENST00000364748 108 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 OR1L6-202ENST00000373684 1044 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AL450263.2-201ENST00000439400 589 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AL354714.3-201ENST00000447284 493 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AC090804.1-201ENST00000448870 490 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 IGBP1P5-201ENST00000507524 1000 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AC034244.2-201ENST00000514668 858 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 MIR3667-201ENST00000581025 74 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AC068790.4-201ENST00000602474 263 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AL020997.2-201ENST00000602607 184 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 MIR6780A-201ENST00000615089 68 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 MIR6839-201ENST00000620425 113 ntBASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HDDC3Q8N4P3 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
HDDC3Q8N4P3 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.09□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms