Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RPL7P39-201ENST00000481157 744 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.86□□□□□ -1.47
USP39Q53GS9 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
USP39Q53GS9 AC026782.2-201ENST00000510845 636 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.86□□□□□ -1.47
USP39Q53GS9 RFPL4AP3-201ENST00000515267 345 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 RNU6-1028P-201ENST00000517164 93 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC5.86□□□□□ -1.47
USP39Q53GS9 OR4V1P-201ENST00000525394 1140 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AC244502.2-201ENST00000543361 851 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC5.86□□□□□ -1.47
USP39Q53GS9 SETP1-201ENST00000556014 845 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 AL049779.3-201ENST00000557141 606 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 AC025918.2-201ENST00000558683 763 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 AC092868.3-201ENST00000560515 784 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 AC015720.2-201ENST00000567709 334 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.86□□□□□ -1.47
USP39Q53GS9 FKBP1AP1-201ENST00000594588 318 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 MTND3P19-201ENST00000603825 345 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 DPRXP5-201ENST00000604662 539 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AL136295.6-201ENST00000610486 658 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 VN1R74P-201ENST00000613259 503 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.86□□□□□ -1.47
USP39Q53GS9 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.86□□□□□ -1.47
USP39Q53GS9 CASC19-264ENST00000641912 1184 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP39Q53GS9 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.86□□□□□ -1.47
USP39Q53GS9 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
USP39Q53GS9 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
USP39Q53GS9 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.86□□□□□ -1.47
USP39Q53GS9 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP39Q53GS9 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
USP39Q53GS9 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP39Q53GS9 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
USP39Q53GS9 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP39Q53GS9 AC245100.2-201ENST00000454544 1679 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.85□□□□□ -1.47
USP39Q53GS9 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP39Q53GS9 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP39Q53GS9 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
USP39Q53GS9 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
USP39Q53GS9 AC016583.1-201ENST00000624221 2431 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP39Q53GS9 AC109780.1-201ENST00000451768 1344 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP39Q53GS9 SNORD1C-201ENST00000363315 78 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 RNU6-694P-201ENST00000364071 147 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 RNU6-304P-201ENST00000364855 107 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC5.85□□□□□ -1.47
USP39Q53GS9 Y_RNA.472-201ENST00000384322 102 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 SNORD116-12-201ENST00000384468 92 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
USP39Q53GS9 RNU6-796P-201ENST00000391086 107 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 DPPA2P3-201ENST00000411853 655 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC5.85□□□□□ -1.47
USP39Q53GS9 MTND4P20-201ENST00000424125 869 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.85□□□□□ -1.47
USP39Q53GS9 AC113412.1-201ENST00000425840 504 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 DEFB130D-201ENST00000426866 237 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 MGAT2P2-201ENST00000427194 797 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 NPM1P22-201ENST00000427761 952 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.85□□□□□ -1.47
USP39Q53GS9 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.85□□□□□ -1.47
USP39Q53GS9 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC5.85□□□□□ -1.47
USP39Q53GS9 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC5.85□□□□□ -1.47
USP39Q53GS9 MTATP6P13-201ENST00000438531 667 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 PTMAP6-201ENST00000439110 327 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 ELOCP8-201ENST00000439309 332 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 ELOCP15-201ENST00000442090 332 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 AC023141.8-201ENST00000442554 208 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 CUBNP2-201ENST00000443534 1139 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.85□□□□□ -1.47
USP39Q53GS9 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC5.85□□□□□ -1.47
USP39Q53GS9 PTENP1-201ENST00000447117 1215 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 FRG2FP-204ENST00000453982 852 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 RPS6P2-201ENST00000454208 705 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.85□□□□□ -1.47
USP39Q53GS9 AC005410.1-202ENST00000460347 485 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 TPT1P3-201ENST00000492841 512 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 AC015864.1-201ENST00000496512 544 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC5.85□□□□□ -1.47
USP39Q53GS9 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC5.85□□□□□ -1.47
USP39Q53GS9 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC5.85□□□□□ -1.47
USP39Q53GS9 AC138938.1-201ENST00000515431 782 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC5.85□□□□□ -1.47
USP39Q53GS9 AC020937.1-201ENST00000519677 1013 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 NRBF2P4-201ENST00000520874 850 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC5.85□□□□□ -1.47
USP39Q53GS9 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.85□□□□□ -1.47
USP39Q53GS9 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.85□□□□□ -1.47
USP39Q53GS9 AC006518.2-201ENST00000542513 940 ntBASIC5.85□□□□□ -1.47
USP39Q53GS9 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
USP39Q53GS9 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.85□□□□□ -1.47
USP39Q53GS9 RBM22P12-201ENST00000567098 1255 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms