Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 RNA5SP43-201ENST00000516559 110 ntBASIC4.42□□□□□ -1.7
RFX4Q33E94 AC090151.1-201ENST00000520784 730 ntBASIC4.42□□□□□ -1.7
RFX4Q33E94 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
RFX4Q33E94 AC100770.1-201ENST00000532310 322 ntBASIC4.42□□□□□ -1.7
RFX4Q33E94 AC015912.2-201ENST00000571053 181 ntBASIC4.42□□□□□ -1.7
RFX4Q33E94 AL121834.1-201ENST00000572284 509 ntBASIC4.42□□□□□ -1.7
RFX4Q33E94 AP000919.1-201ENST00000582850 985 ntBASIC4.42□□□□□ -1.7
RFX4Q33E94 AC011447.4-201ENST00000587562 111 ntBASIC4.42□□□□□ -1.7
RFX4Q33E94 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.42□□□□□ -1.7
RFX4Q33E94 AL512329.2-201ENST00000607350 548 ntBASIC4.42□□□□□ -1.7
RFX4Q33E94 AP000864.1-201ENST00000609424 650 ntBASIC4.42□□□□□ -1.7
RFX4Q33E94 AC126915.2-201ENST00000610957 190 ntBASIC4.42□□□□□ -1.7
RFX4Q33E94 AL353662.3-201ENST00000625131 237 ntBASIC4.42□□□□□ -1.7
RFX4Q33E94 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
RFX4Q33E94 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
RFX4Q33E94 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.42□□□□□ -1.7
RFX4Q33E94 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
RFX4Q33E94 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
RFX4Q33E94 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
RFX4Q33E94 HSPA8P17-201ENST00000427029 1382 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 AL592182.3-201ENST00000642132 3304 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.41□□□□□ -1.7
RFX4Q33E94 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
RFX4Q33E94 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.41□□□□□ -1.7
RFX4Q33E94 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
RFX4Q33E94 RNU6-1263P-201ENST00000384601 106 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
RFX4Q33E94 HMGB3P7-201ENST00000400214 611 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 AL391361.1-201ENST00000405580 489 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 SNORA11.3-201ENST00000408471 128 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC4.41□□□□□ -1.7
RFX4Q33E94 RNA5SP345-201ENST00000410646 108 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.41□□□□□ -1.7
RFX4Q33E94 RPL34P20-201ENST00000442771 351 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 AC011753.3-201ENST00000443436 406 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
RFX4Q33E94 OR52Y1P-201ENST00000452418 828 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.41□□□□□ -1.7
RFX4Q33E94 UBA52P7-201ENST00000486088 380 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 RN7SL97P-201ENST00000486780 299 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.41□□□□□ -1.7
RFX4Q33E94 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.41□□□□□ -1.7
RFX4Q33E94 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
RFX4Q33E94 AP000926.3-201ENST00000497201 299 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 SNORD116-30-201ENST00000516468 85 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC4.41□□□□□ -1.7
RFX4Q33E94 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.41□□□□□ -1.7
RFX4Q33E94 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.41□□□□□ -1.7
RFX4Q33E94 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
RFX4Q33E94 FKBP1BP1-201ENST00000553366 325 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.41□□□□□ -1.7
RFX4Q33E94 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
RFX4Q33E94 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
RFX4Q33E94 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.41□□□□□ -1.7
RFX4Q33E94 AC209154.1-201ENST00000582156 337 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.41□□□□□ -1.7
RFX4Q33E94 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.41□□□□□ -1.7
RFX4Q33E94 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.41□□□□□ -1.7
RFX4Q33E94 SNORA35B-201ENST00000607417 129 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC4.41□□□□□ -1.7
RFX4Q33E94 AC096586.2-201ENST00000610260 441 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 MIR6768-201ENST00000610734 72 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 LINC00901.1-201ENST00000617252 152 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 SNORA11.6-201ENST00000619030 128 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 AL669942.2-201ENST00000620352 697 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
RFX4Q33E94 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
RFX4Q33E94 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
RFX4Q33E94 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
RFX4Q33E94 AL133243.3-201ENST00000617415 3004 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
RFX4Q33E94 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
RFX4Q33E94 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
RFX4Q33E94 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC4.41□□□□□ -1.7
RFX4Q33E94 AC107027.3-201ENST00000565095 3473 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.41□□□□□ -1.7
RFX4Q33E94 THAP12P4-201ENST00000528321 2266 ntBASIC4.41□□□□□ -1.7
RFX4Q33E94 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
RFX4Q33E94 AL136164.3-201ENST00000624429 3978 ntBASIC4.4□□□□□ -1.7
RFX4Q33E94 ZNF733P-202ENST00000444809 1573 ntBASIC4.4□□□□□ -1.7
RFX4Q33E94 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.4□□□□□ -1.7
RFX4Q33E94 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.4□□□□□ -1.71
RFX4Q33E94 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
RFX4Q33E94 Z97832.1-201ENST00000402490 328 ntBASIC4.4□□□□□ -1.71
RFX4Q33E94 AL357515.1-201ENST00000402967 542 ntBASIC4.4□□□□□ -1.71
RFX4Q33E94 AL121834.1-202ENST00000404494 277 ntBASIC4.4□□□□□ -1.71
RFX4Q33E94 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.4□□□□□ -1.71
RFX4Q33E94 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.4□□□□□ -1.71
RFX4Q33E94 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC4.4□□□□□ -1.71
RFX4Q33E94 RPL7P57-201ENST00000423238 740 ntBASIC4.4□□□□□ -1.71
RFX4Q33E94 PRPF38AP2-201ENST00000438179 851 ntBASIC4.4□□□□□ -1.71
RFX4Q33E94 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.4□□□□□ -1.71
RFX4Q33E94 HMGB3P9-201ENST00000441799 583 ntBASIC4.4□□□□□ -1.71
RFX4Q33E94 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.4□□□□□ -1.71
RFX4Q33E94 NDUFA5P8-201ENST00000449019 346 ntBASIC4.4□□□□□ -1.71
RFX4Q33E94 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.4□□□□□ -1.71
RFX4Q33E94 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
RFX4Q33E94 AC008410.1-201ENST00000483777 339 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms