Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
CHD3Q12873 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
CHD3Q12873 BMS1P3-201ENST00000372011 932 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.19□□□□□ -1.74
CHD3Q12873 PCNPP4-201ENST00000414817 517 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 AL645608.4-201ENST00000423619 154 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 RPL34P6-201ENST00000432390 345 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 AL359073.1-201ENST00000448036 403 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 AC020779.1-201ENST00000478757 796 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.19□□□□□ -1.74
CHD3Q12873 ARL4AP1-201ENST00000503220 705 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 RN7SKP122-201ENST00000515923 296 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 AC006349.1-201ENST00000555526 235 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.19□□□□□ -1.74
CHD3Q12873 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.19□□□□□ -1.74
CHD3Q12873 VN1R85P-201ENST00000601587 426 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 AL022401.1-201ENST00000619498 108 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 AC135068.12-201ENST00000637370 931 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 TMEM30CP-203ENST00000637814 1035 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CHD3Q12873 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CHD3Q12873 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
CHD3Q12873 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.19□□□□□ -1.74
CHD3Q12873 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.19□□□□□ -1.74
CHD3Q12873 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CHD3Q12873 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
CHD3Q12873 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
CHD3Q12873 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
CHD3Q12873 AL359643.1-201ENST00000404109 423 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
CHD3Q12873 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.19□□□□□ -1.74
CHD3Q12873 AC009238.2-201ENST00000431026 355 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC4.19□□□□□ -1.74
CHD3Q12873 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.19□□□□□ -1.74
CHD3Q12873 NDUFB4P11-201ENST00000560510 395 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 BGLT3-201ENST00000564523 994 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 CCDC58P3-201ENST00000590792 430 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
CHD3Q12873 AL590392.1-201ENST00000604960 446 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 AP000648.2-201ENST00000624182 404 ntBASIC4.19□□□□□ -1.74
CHD3Q12873 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
CHD3Q12873 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
CHD3Q12873 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.19□□□□□ -1.74
CHD3Q12873 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CHD3Q12873 ASNSP1-204ENST00000641977 1664 ntBASIC4.18□□□□□ -1.74
CHD3Q12873 ICE2P1-201ENST00000512800 1849 ntBASIC4.18□□□□□ -1.74
CHD3Q12873 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CHD3Q12873 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CHD3Q12873 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.18□□□□□ -1.74
CHD3Q12873 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.18□□□□□ -1.74
CHD3Q12873 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CHD3Q12873 RNA5SP515-201ENST00000364570 118 ntBASIC4.18□□□□□ -1.74
CHD3Q12873 EIF4A1P1-201ENST00000420241 934 ntBASIC4.18□□□□□ -1.74
CHD3Q12873 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.18□□□□□ -1.74
CHD3Q12873 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.18□□□□□ -1.74
CHD3Q12873 IGHV5-78-201ENST00000450948 295 ntBASIC4.18□□□□□ -1.74
CHD3Q12873 RN7SL41P-201ENST00000476144 297 ntBASIC4.18□□□□□ -1.74
CHD3Q12873 HMGN2P25-201ENST00000486956 268 ntBASIC4.18□□□□□ -1.74
CHD3Q12873 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.18□□□□□ -1.74
CHD3Q12873 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC4.18□□□□□ -1.74
CHD3Q12873 RN7SKP260-201ENST00000516907 149 ntBASIC4.18□□□□□ -1.74
CHD3Q12873 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.18□□□□□ -1.74
CHD3Q12873 MIR5699-201ENST00000578903 90 ntBASIC4.18□□□□□ -1.74
CHD3Q12873 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
CHD3Q12873 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.18□□□□□ -1.74
CHD3Q12873 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.18□□□□□ -1.74
CHD3Q12873 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
CHD3Q12873 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.18□□□□□ -1.74
CHD3Q12873 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.18□□□□□ -1.74
CHD3Q12873 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.18□□□□□ -1.74
CHD3Q12873 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CHD3Q12873 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CHD3Q12873 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.18□□□□□ -1.74
CHD3Q12873 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
CHD3Q12873 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CHD3Q12873 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CHD3Q12873 LINC01109-201ENST00000603837 3081 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 MIR23B-201ENST00000384832 97 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 ATG4AP1-201ENST00000416893 538 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.17□□□□□ -1.74
CHD3Q12873 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.17□□□□□ -1.74
CHD3Q12873 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.17□□□□□ -1.74
CHD3Q12873 CDC27P1-201ENST00000445384 715 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 AC079168.2-201ENST00000453977 416 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 RN7SL189P-201ENST00000468631 289 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC4.17□□□□□ -1.74
CHD3Q12873 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.17□□□□□ -1.74
CHD3Q12873 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.17□□□□□ -1.74
CHD3Q12873 NIFKP7-201ENST00000503365 834 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.17□□□□□ -1.74
CHD3Q12873 RNU6-709P-201ENST00000517257 104 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 HMGB1P19-201ENST00000517578 577 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.17□□□□□ -1.74
CHD3Q12873 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.17□□□□□ -1.74
CHD3Q12873 AL049830.4-201ENST00000555149 351 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 EIF1P5-201ENST00000585002 234 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.17□□□□□ -1.74
CHD3Q12873 MFSD8-220ENST00000641243 1422 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 133.2 ms