Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 uc_338.13-201ENST00000618243 179 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 MIR6852-201ENST00000621699 66 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
PRKDCP78527 WAC-209ENST00000428935 1320 ntTSL 2 BASIC3.17□□□□□ -1.9
PRKDCP78527 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
PRKDCP78527 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.17□□□□□ -1.9
PRKDCP78527 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.17□□□□□ -1.9
PRKDCP78527 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.17□□□□□ -1.9
PRKDCP78527 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
PRKDCP78527 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 RPL12P9-201ENST00000412942 488 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC3.17□□□□□ -1.9
PRKDCP78527 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.17□□□□□ -1.9
PRKDCP78527 RPL12P46-201ENST00000436610 195 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 ISCUP1-201ENST00000454451 448 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.17□□□□□ -1.9
PRKDCP78527 RPS20P21-201ENST00000466859 343 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 TRIM36-IT1-201ENST00000503723 881 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC3.17□□□□□ -1.9
PRKDCP78527 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
PRKDCP78527 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC3.17□□□□□ -1.9
PRKDCP78527 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 AC104260.2-201ENST00000623551 3497 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 MIR3065-201ENST00000390137 79 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 MTND4LP20-201ENST00000402379 270 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 AC006994.1-201ENST00000438212 839 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC3.17□□□□□ -1.9
PRKDCP78527 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC3.17□□□□□ -1.9
PRKDCP78527 RPS4XP15-201ENST00000489210 795 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 RNU1-95P-201ENST00000516357 160 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 RNU1-128P-201ENST00000516704 160 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC3.17□□□□□ -1.9
PRKDCP78527 BPIFA4P-203ENST00000603168 689 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC3.17□□□□□ -1.9
PRKDCP78527 SCARNA15.3-201ENST00000626315 122 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 SCARNA4.1-201ENST00000628597 123 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 LINC00622-201ENST00000562811 1570 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC3.17□□□□□ -1.9
PRKDCP78527 ZC3H6-202ENST00000409871 11542 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
PRKDCP78527 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.17□□□□□ -1.9
PRKDCP78527 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 RNU1-14P-201ENST00000362759 152 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 AP000357.1-201ENST00000409926 1165 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 RPL7AP49-201ENST00000429522 581 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 AL591438.1-201ENST00000433508 581 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC3.17□□□□□ -1.9
PRKDCP78527 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.17□□□□□ -1.9
PRKDCP78527 GTF2IP8-201ENST00000560687 584 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC3.17□□□□□ -1.9
PRKDCP78527 AC090312.1-201ENST00000580637 348 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.17□□□□□ -1.9
PRKDCP78527 MITF-203ENST00000328528 4680 ntTSL 5 BASIC3.16□□□□□ -1.9
PRKDCP78527 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
PRKDCP78527 ADGRB3-202ENST00000370598 6010 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
PRKDCP78527 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC3.16□□□□□ -1.9
PRKDCP78527 AC115285.1-201ENST00000424879 736 ntBASIC3.16□□□□□ -1.9
PRKDCP78527 COX6B1P7-201ENST00000430845 235 ntBASIC3.16□□□□□ -1.9
PRKDCP78527 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.16□□□□□ -1.9
PRKDCP78527 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.16□□□□□ -1.9
PRKDCP78527 AC025518.1-201ENST00000479856 347 ntBASIC3.16□□□□□ -1.9
PRKDCP78527 OR8Q1P-201ENST00000526467 655 ntBASIC3.16□□□□□ -1.9
PRKDCP78527 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.16□□□□□ -1.9
PRKDCP78527 VLDLR-203ENST00000382100 9163 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
PRKDCP78527 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PRKDCP78527 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
PRKDCP78527 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PRKDCP78527 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
PRKDCP78527 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PRKDCP78527 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
PRKDCP78527 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC3.16□□□□□ -1.9
PRKDCP78527 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
PRKDCP78527 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC3.16□□□□□ -1.9
PRKDCP78527 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PRKDCP78527 UBBP2-201ENST00000376781 231 ntBASIC3.16□□□□□ -1.9
PRKDCP78527 AC090018.1-201ENST00000434369 367 ntBASIC3.16□□□□□ -1.9
PRKDCP78527 AC099670.2-201ENST00000435130 321 ntBASIC3.16□□□□□ -1.9
PRKDCP78527 AC104164.2-201ENST00000496953 495 ntBASIC3.16□□□□□ -1.9
PRKDCP78527 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.16□□□□□ -1.9
PRKDCP78527 IGLVVI-25-1-201ENST00000521893 249 ntBASIC3.16□□□□□ -1.9
PRKDCP78527 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.16□□□□□ -1.9
PRKDCP78527 FKBP1BP1-201ENST00000553366 325 ntBASIC3.16□□□□□ -1.9
PRKDCP78527 AC022884.2-201ENST00000578535 580 ntBASIC3.16□□□□□ -1.9
PRKDCP78527 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms