Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.41□□□□□ -1.7
CDX1P47902 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 CASC19-204ENST00000641001 2055 ntBASIC4.41□□□□□ -1.7
CDX1P47902 SMG1P6-201ENST00000532337 2930 ntBASIC4.41□□□□□ -1.7
CDX1P47902 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.41□□□□□ -1.7
CDX1P47902 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC4.41□□□□□ -1.7
CDX1P47902 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
CDX1P47902 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
CDX1P47902 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 OR3A2-201ENST00000408891 1076 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC4.41□□□□□ -1.7
CDX1P47902 Z68694.1-201ENST00000413929 841 ntBASIC4.41□□□□□ -1.7
CDX1P47902 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC4.41□□□□□ -1.7
CDX1P47902 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
CDX1P47902 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 AL353597.2-202ENST00000434901 373 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.41□□□□□ -1.7
CDX1P47902 GAPDHP48-201ENST00000436626 961 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.41□□□□□ -1.7
CDX1P47902 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
CDX1P47902 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC4.41□□□□□ -1.7
CDX1P47902 EIF4A1P11-201ENST00000451239 222 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC4.41□□□□□ -1.7
CDX1P47902 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC4.41□□□□□ -1.7
CDX1P47902 CCDC75P1-201ENST00000469247 791 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC4.41□□□□□ -1.7
CDX1P47902 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.41□□□□□ -1.7
CDX1P47902 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.41□□□□□ -1.7
CDX1P47902 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC4.41□□□□□ -1.7
CDX1P47902 OR4A46P-201ENST00000527255 933 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AC024940.3-201ENST00000538551 316 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC4.41□□□□□ -1.7
CDX1P47902 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC4.41□□□□□ -1.7
CDX1P47902 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.41□□□□□ -1.7
CDX1P47902 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.41□□□□□ -1.7
CDX1P47902 AL049830.4-201ENST00000555149 351 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC4.41□□□□□ -1.7
CDX1P47902 MTCYBP13-201ENST00000578634 1093 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AC125494.3-201ENST00000602759 455 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AL353600.1-201ENST00000608148 251 ntBASIC4.41□□□□□ -1.7
CDX1P47902 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC4.41□□□□□ -1.7
CDX1P47902 AL669942.2-201ENST00000620352 697 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC4.41□□□□□ -1.7
CDX1P47902 AC068880.4-201ENST00000623082 495 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AL590396.2-201ENST00000636511 1041 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AC106858.1-201ENST00000637497 429 ntBASIC4.41□□□□□ -1.7
CDX1P47902 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.41□□□□□ -1.7
CDX1P47902 SRRM1P3-201ENST00000426911 2678 ntBASIC4.41□□□□□ -1.7
CDX1P47902 OR51H2P-202ENST00000641424 3046 ntBASIC4.41□□□□□ -1.7
CDX1P47902 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
CDX1P47902 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC4.41□□□□□ -1.7
CDX1P47902 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
CDX1P47902 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
CDX1P47902 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CDX1P47902 MTCO1P11-201ENST00000429111 1528 ntBASIC4.41□□□□□ -1.7
CDX1P47902 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
CDX1P47902 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
CDX1P47902 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.7
CDX1P47902 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CDX1P47902 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CDX1P47902 AC114786.1-201ENST00000512892 1415 ntBASIC4.4□□□□□ -1.7
CDX1P47902 AL138820.1-201ENST00000617901 5305 ntBASIC4.4□□□□□ -1.7
CDX1P47902 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.7
CDX1P47902 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
CDX1P47902 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
CDX1P47902 SNORA51.1-201ENST00000363243 140 ntBASIC4.4□□□□□ -1.71
CDX1P47902 RNA5SP30-201ENST00000365552 115 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AC005522.1-201ENST00000395416 346 ntBASIC4.4□□□□□ -1.71
CDX1P47902 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC4.4□□□□□ -1.71
CDX1P47902 AC069282.1-201ENST00000411911 526 ntBASIC4.4□□□□□ -1.71
CDX1P47902 OR6E1P-201ENST00000414424 923 ntBASIC4.4□□□□□ -1.71
CDX1P47902 RNF10P1-201ENST00000418589 369 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AC079355.1-201ENST00000421770 223 ntBASIC4.4□□□□□ -1.71
CDX1P47902 EIF4A1P7-201ENST00000421800 1220 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC4.4□□□□□ -1.71
CDX1P47902 AC073310.1-201ENST00000423226 1033 ntBASIC4.4□□□□□ -1.71
CDX1P47902 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CDX1P47902 OR2AH1P-201ENST00000425717 928 ntBASIC4.4□□□□□ -1.71
CDX1P47902 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.4□□□□□ -1.71
CDX1P47902 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC4.4□□□□□ -1.71
CDX1P47902 RPL12P28-201ENST00000430852 489 ntBASIC4.4□□□□□ -1.71
CDX1P47902 TMX2P1-201ENST00000436507 708 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AL158053.1-201ENST00000441503 453 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC4.4□□□□□ -1.71
CDX1P47902 AL935212.3-201ENST00000450729 284 ntBASIC4.4□□□□□ -1.71
CDX1P47902 MTND2P39-201ENST00000457230 764 ntBASIC4.4□□□□□ -1.71
CDX1P47902 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC4.4□□□□□ -1.71
CDX1P47902 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC4.4□□□□□ -1.71
CDX1P47902 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms