Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF619P1-201ENST00000446539 752 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC117394.1-201ENST00000477323 567 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 PFN1P8-201ENST00000497012 543 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 DSTNP2-201ENST00000504533 515 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 IGKV2-36-201ENST00000519999 223 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC007954.1-201ENST00000554198 494 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 MIR3915-201ENST00000578518 97 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 RNU4ATAC-201ENST00000580972 127 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AF131215.7-201ENST00000602443 707 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC079315.1-201ENST00000602952 623 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AP004247.3-201ENST00000608682 624 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 MIR6071-201ENST00000616741 78 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 Six3os1_2.1-201ENST00000616963 217 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC026585.1-201ENST00000619582 524 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AL359715.5-201ENST00000623431 443 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AL353743.4-201ENST00000422653 1547 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 DNM1P47-203ENST00000571780 12667 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AL391994.1-201ENST00000254724 282 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 Y_RNA.560-201ENST00000384689 102 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 RNU6-1300P-201ENST00000391046 108 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC004386.1-201ENST00000393214 761 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 SNORA77.2-201ENST00000408571 112 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 HMGA1P8-201ENST00000414130 321 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AL161449.1-201ENST00000414531 1199 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 P2RY10P2-201ENST00000416730 913 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 RPS17P17-201ENST00000419392 409 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AL050321.1-201ENST00000432363 400 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC010153.1-201ENST00000432862 727 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AL590103.1-201ENST00000434488 307 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 VN1R110P-201ENST00000438988 971 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AL512593.1-201ENST00000444758 779 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC112187.1-201ENST00000455837 479 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 MTCO2P18-201ENST00000457151 658 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 RN7SL352P-201ENST00000466002 277 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC092865.4-201ENST00000477936 615 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC080014.1-201ENST00000496877 1201 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC005178.1-201ENST00000508392 440 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC010285.3-201ENST00000511668 676 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 RNA5SP135-201ENST00000517019 125 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 FAU-203ENST00000525297 355 ntTSL 5 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 RGS4-207ENST00000527809 817 ntTSL 4 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 CYCSP38-201ENST00000559840 322 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC103987.3-201ENST00000582071 292 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC064872.1-201ENST00000604823 1072 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AL136981.2-201ENST00000617319 734 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC008443.7-201ENST00000622195 246 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 CDRT1-208ENST00000630868 794 ntBASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 185.4 ms