Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 WDR75-207ENST00000631047 270 ntTSL 5 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 CYP4F35P-202ENST00000636121 390 ntBASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 OR2L1P-202ENST00000641567 1023 ntBASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 AC074029.4-201ENST00000624796 1859 ntBASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 MUC2-202ENST00000613187 4845 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 AC000123.3-201ENST00000624029 4975 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 AMELX-201ENST00000348912 737 ntTSL 5 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 RNU6-171P-201ENST00000384354 107 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 DUTP5-201ENST00000406790 469 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 SPTLC1P2-201ENST00000407089 121 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 U3.36-201ENST00000408418 213 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 RNU2-17P-201ENST00000410290 190 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 RPL35AP24-201ENST00000413846 330 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 RPS29P10-201ENST00000439197 166 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 ACTR3P2-201ENST00000439585 1257 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 EEF1B2P5-201ENST00000444820 548 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 RPL31P44-201ENST00000447680 377 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 RPL37P3-201ENST00000456825 293 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 OR4A2P-201ENST00000527276 913 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 AC106785.3-201ENST00000564064 847 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 AC011477.5-201ENST00000586571 259 ntBASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC6.77□□□□□ -1.33
CHMP4AQ9BY43 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 VN2R3P-201ENST00000422626 1412 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 AL592182.3-201ENST00000642132 3304 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 PANDAR-201ENST00000629595 1506 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 AL022311.1-201ENST00000623726 19416 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 RNU6-984P-201ENST00000363236 109 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 RNU1-87P-201ENST00000363727 170 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 MIR600-201ENST00000385007 98 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 OR4K12P-201ENST00000406538 961 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 MRM2-202ENST00000407040 582 ntTSL 3 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 BMS1P13-201ENST00000417301 885 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 AC090018.1-201ENST00000434369 367 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 AC007000.2-201ENST00000442564 487 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 CEACAMP7-201ENST00000444105 496 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 AC109462.1-201ENST00000491087 368 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 HMGN1P9-201ENST00000515212 298 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 OR4A46P-201ENST00000527255 933 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 HMGN2P6-201ENST00000551091 273 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 AC106730.2-201ENST00000566641 540 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 AC211433.2-201ENST00000608433 387 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 AC016769.4-201ENST00000616893 535 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 U6.48-201ENST00000618523 106 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 AC134882.1-201ENST00000603738 1676 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 AC025125.1-201ENST00000624743 1922 ntBASIC6.76□□□□□ -1.33
CHMP4AQ9BY43 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CHMP4AQ9BY43 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CHMP4AQ9BY43 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CHMP4AQ9BY43 AC023421.1-201ENST00000590535 1785 ntBASIC6.75□□□□□ -1.33
CHMP4AQ9BY43 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
CHMP4AQ9BY43 OR9G4-201ENST00000302957 984 ntBASIC6.75□□□□□ -1.33
CHMP4AQ9BY43 RNA5SP305-201ENST00000362665 119 ntBASIC6.75□□□□□ -1.33
CHMP4AQ9BY43 U3.2-201ENST00000362981 210 ntBASIC6.75□□□□□ -1.33
CHMP4AQ9BY43 U3.3-201ENST00000362986 216 ntBASIC6.75□□□□□ -1.33
CHMP4AQ9BY43 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms