Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC097173.1-201ENST00000505862 819 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AC092709.1-201ENST00000521355 1045 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AC242628.1-201ENST00000606810 391 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AL355802.4-201ENST00000607635 548 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AC092574.1-201ENST00000609771 420 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AC068446.1-201ENST00000556425 1549 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AL512283.1-201ENST00000606756 1384 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AL390316.1-201ENST00000406279 553 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AL138878.2-201ENST00000440581 1241 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 XKRY2-201ENST00000442362 1093 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 OR7E125P-201ENST00000443450 846 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AL627224.1-201ENST00000448334 444 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 MTND2P25-201ENST00000449028 610 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 OR52J1P-201ENST00000450596 932 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AC106806.2-201ENST00000509365 500 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AP003049.1-201ENST00000529418 457 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 GCSHP4-201ENST00000538792 439 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 UBE2FP2-201ENST00000566646 462 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 MTND2P13-201ENST00000577438 1039 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AF230666.2-201ENST00000602328 725 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AL109620.1-201ENST00000618738 1197 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 MIR6810-201ENST00000622701 70 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AP003400.6-201ENST00000624698 740 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 SDAD1P1-202ENST00000524156 2051 ntBASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC3Q9BQI4 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.9□□□□□ -1.62
CCDC3Q9BQI4 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC3Q9BQI4 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC3Q9BQI4 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.62
CCDC3Q9BQI4 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.9□□□□□ -1.62
CCDC3Q9BQI4 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.9□□□□□ -1.62
CCDC3Q9BQI4 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC4.9□□□□□ -1.62
CCDC3Q9BQI4 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC3Q9BQI4 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 RPS4XP9-201ENST00000405151 780 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AC002524.1-201ENST00000411687 547 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 MTND4P24-201ENST00000424002 397 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AC093084.1-201ENST00000424233 687 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AC023141.6-201ENST00000429418 337 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 CABYRP1-201ENST00000465493 1045 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 LARP7P4-201ENST00000481075 878 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms