Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 SNRPCP2-201ENST00000504370 475 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 AC209154.1-201ENST00000582156 337 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 AC095055.1-201ENST00000603472 1113 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 AC023509.5-201ENST00000617434 807 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 AC011815.3-201ENST00000624194 473 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 AL353662.3-201ENST00000625131 237 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 AC011493.1-201ENST00000596753 1632 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.57
CCDC112Q8NEF3 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.57
CCDC112Q8NEF3 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 BMS1P3-201ENST00000372011 932 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AL589647.1-201ENST00000402485 466 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 TBCAP2-201ENST00000416175 326 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 VN1R54P-201ENST00000435210 1049 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 PRPF38AP2-201ENST00000438179 851 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AL589765.3-201ENST00000446084 462 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AL389915.2-201ENST00000454576 441 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AC116562.1-201ENST00000485355 781 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AC008953.1-201ENST00000497334 318 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AC100770.1-201ENST00000532310 322 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AC027455.1-201ENST00000574104 594 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 MIR4646-201ENST00000580775 63 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AP000919.1-201ENST00000582850 985 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AC010424.2-201ENST00000607594 443 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 DDX18P6-201ENST00000450119 1997 ntBASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC112Q8NEF3 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 MTND4P26-201ENST00000415971 1359 ntBASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 AC012158.1-204ENST00000483430 465 ntBASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 AC021733.2-201ENST00000518830 497 ntBASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 AP002373.2-201ENST00000541631 1060 ntBASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 AL158196.1-201ENST00000616786 434 ntBASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 AP002799.1-201ENST00000623552 423 ntBASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC112Q8NEF3 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 RNA5SP52-201ENST00000362448 134 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 MIR550A3-201ENST00000390735 95 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 RN7SKP216-201ENST00000411050 312 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 GSTM3P2-201ENST00000412746 530 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 SETP10-201ENST00000424368 814 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 DYNLL1P7-201ENST00000429273 258 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 RPS17P8-201ENST00000434525 335 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 TMX2P1-201ENST00000436507 708 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 AC073850.1-201ENST00000449243 255 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 AC113430.1-201ENST00000506872 718 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 COX6B1P5-201ENST00000509843 249 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 RNA5SP154-201ENST00000516193 111 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 RNA5SP43-201ENST00000516559 110 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 RN7SKP66-201ENST00000516681 231 ntBASIC5.19□□□□□ -1.58
CCDC112Q8NEF3 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms