Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC107027.3-201ENST00000565095 3473 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 RNU6-225P-201ENST00000384613 103 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 SNORA68.2-201ENST00000391263 128 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AP002530.1-201ENST00000405705 684 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 DHFRP5-201ENST00000406944 564 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 RPL7AP49-201ENST00000429522 581 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AL591438.1-201ENST00000433508 581 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 RPL19P16-201ENST00000433839 588 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AC016772.1-201ENST00000444170 1261 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AC112498.1-201ENST00000444401 332 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AC073264.2-201ENST00000448886 166 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 RN7SL814P-201ENST00000487715 300 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AC010350.1-201ENST00000504908 231 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AC097173.1-201ENST00000505862 819 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AC021193.1-201ENST00000511607 420 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 OR7H2P-201ENST00000513483 306 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 NMNAT1P1-201ENST00000554095 876 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 MIR4284-201ENST00000578924 81 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AC068020.1-201ENST00000594215 661 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AC130352.1-201ENST00000602979 661 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 MEMO1P5-201ENST00000604810 406 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 SPATA2P1-201ENST00000431223 2055 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 MTCO1P8-201ENST00000416914 1523 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 AP001029.2-203ENST00000589795 4910 ntBASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.12□□□□□ -1.59
HDDC3Q8N4P3 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AC093719.1-202ENST00000392735 373 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AL137845.2-201ENST00000444292 988 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 RPL7L1P1-201ENST00000448259 785 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 CLIC4P1-201ENST00000453177 535 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 RPL23AP72-201ENST00000492447 435 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 RPSAP51-201ENST00000497462 645 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 BTF3P13-201ENST00000513224 490 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AP006289.1-201ENST00000538089 277 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 UBE2FP2-201ENST00000566646 462 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AC005021.1-201ENST00000608730 355 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AC016717.3-201ENST00000624730 554 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 AC112198.2-201ENST00000426589 6996 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 BX005019.1-201ENST00000561881 1810 ntBASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.11□□□□□ -1.59
HDDC3Q8N4P3 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms