Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 RN7SKP153-201ENST00000365026 316 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC233289.1-201ENST00000403700 508 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AL353692.2-201ENST00000407054 335 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 RN7SKP126-201ENST00000411143 300 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 VN1R54P-201ENST00000435210 1049 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 TRAPPC13P1-201ENST00000435991 1062 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AL772161.1-201ENST00000439130 476 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 OTX2P1-201ENST00000450956 354 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 Z92846.1-201ENST00000456203 268 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 RPL7P48-201ENST00000461513 746 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC108729.2-201ENST00000476543 840 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC022133.1-201ENST00000490961 571 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 RPS27AP16-201ENST00000492222 470 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 RN7SKP141-201ENST00000516167 338 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC103833.1-201ENST00000517442 172 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 HAUS1P3-201ENST00000523909 662 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC024940.3-201ENST00000538551 316 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC093014.1-201ENST00000548926 724 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC127381.1-201ENST00000555979 939 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 MIR1264-201ENST00000616374 69 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 uc_338.9-201ENST00000617424 182 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC099494.2-201ENST00000623371 978 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC020923.1-201ENST00000624021 917 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
PRPF39Q86UA1 SMG1P4-204ENST00000523028 4131 ntBASIC5.33□□□□□ -1.56
PRPF39Q86UA1 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 BX005019.1-201ENST00000561881 1810 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC023421.1-201ENST00000590535 1785 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 U3.3-201ENST00000362986 216 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 RNU1-106P-201ENST00000384382 164 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 MIR550A3-201ENST00000390735 95 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 TAF9BP2-201ENST00000400856 499 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 RPS27AP11-201ENST00000402798 447 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC009302.1-201ENST00000417147 390 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 RPL12P18-201ENST00000437175 325 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 NDUFB5P1-201ENST00000508134 564 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 GTF2F2P1-201ENST00000511083 675 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC006427.1-201ENST00000514359 712 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AP000676.2-201ENST00000529711 301 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC068714.1-201ENST00000559623 800 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 MIR4472-2-201ENST00000582069 67 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC024940.4-201ENST00000605507 246 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC004775.1-201ENST00000607389 753 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC007342.8-201ENST00000623278 678 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC090617.9-201ENST00000623751 147 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 AC092747.4-201ENST00000620519 1861 ntBASIC5.32□□□□□ -1.56
PRPF39Q86UA1 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.32□□□□□ -1.56
PRPF39Q86UA1 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PRPF39Q86UA1 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.31□□□□□ -1.56
PRPF39Q86UA1 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PRPF39Q86UA1 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
PRPF39Q86UA1 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PRPF39Q86UA1 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
PRPF39Q86UA1 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PRPF39Q86UA1 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
PRPF39Q86UA1 MUC2-202ENST00000613187 4845 ntBASIC5.31□□□□□ -1.56
PRPF39Q86UA1 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
PRPF39Q86UA1 RNU6-304P-201ENST00000364855 107 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 122.8 ms