Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC027514.1-201ENST00000588561 1603 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
USP39Q53GS9 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
USP39Q53GS9 AC083837.1-201ENST00000565297 2994 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
USP39Q53GS9 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USP39Q53GS9 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.87□□□□□ -1.47
USP39Q53GS9 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.87□□□□□ -1.47
USP39Q53GS9 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USP39Q53GS9 AC093297.3-201ENST00000607056 2517 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
USP39Q53GS9 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.87□□□□□ -1.47
USP39Q53GS9 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
USP39Q53GS9 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.87□□□□□ -1.47
USP39Q53GS9 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USP39Q53GS9 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
USP39Q53GS9 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USP39Q53GS9 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
USP39Q53GS9 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.87□□□□□ -1.47
USP39Q53GS9 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USP39Q53GS9 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USP39Q53GS9 AL136310.1-201ENST00000404926 654 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.87□□□□□ -1.47
USP39Q53GS9 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.87□□□□□ -1.47
USP39Q53GS9 RANP4-201ENST00000413361 655 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 ELOCP17-201ENST00000414751 326 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 ELOCP9-201ENST00000418624 239 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 AC092651.1-201ENST00000426110 312 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 IFNNP1-201ENST00000429219 553 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.87□□□□□ -1.47
USP39Q53GS9 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.87□□□□□ -1.47
USP39Q53GS9 AL450996.1-201ENST00000445574 1202 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.87□□□□□ -1.47
USP39Q53GS9 CCDC11P1-201ENST00000503137 1162 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.87□□□□□ -1.47
USP39Q53GS9 AC006499.3-201ENST00000506077 748 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.87□□□□□ -1.47
USP39Q53GS9 SCARNA6.1-201ENST00000516989 238 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 AP006245.2-201ENST00000522004 300 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.87□□□□□ -1.47
USP39Q53GS9 AP000916.1-201ENST00000533869 835 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.87□□□□□ -1.47
USP39Q53GS9 IMMP1LP3-201ENST00000604197 224 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC5.87□□□□□ -1.47
USP39Q53GS9 AC007204.2-201ENST00000615022 616 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 AC073968.1-201ENST00000618594 637 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 AC118658.2-201ENST00000618697 459 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 VN1R7P-201ENST00000619242 903 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 AC018755.4-201ENST00000619715 454 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 MIR6837-201ENST00000620884 64 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.87□□□□□ -1.47
USP39Q53GS9 AC235565.1-201ENST00000456962 1325 ntBASIC5.87□□□□□ -1.47
USP39Q53GS9 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
USP39Q53GS9 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
USP39Q53GS9 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.87□□□□□ -1.47
USP39Q53GS9 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
USP39Q53GS9 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.87□□□□□ -1.47
USP39Q53GS9 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.87□□□□□ -1.47
USP39Q53GS9 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
USP39Q53GS9 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.87□□□□□ -1.47
USP39Q53GS9 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.87□□□□□ -1.47
USP39Q53GS9 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
USP39Q53GS9 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
USP39Q53GS9 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.86□□□□□ -1.47
USP39Q53GS9 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP39Q53GS9 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
USP39Q53GS9 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.86□□□□□ -1.47
USP39Q53GS9 MRRFP1-201ENST00000435941 1675 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.86□□□□□ -1.47
USP39Q53GS9 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AC017002.4-201ENST00000604721 1525 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP39Q53GS9 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AC008432.1-201ENST00000615912 1320 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP39Q53GS9 RNU4-4P-201ENST00000364588 130 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AL121977.1-201ENST00000401636 979 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
USP39Q53GS9 RN7SKP166-201ENST00000410812 305 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 RNU2-22P-201ENST00000411266 212 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 AL158825.1-201ENST00000414735 521 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 MTND4LP21-201ENST00000415303 295 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 MTND1P23-201ENST00000416931 372 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC5.86□□□□□ -1.47
USP39Q53GS9 SCP2-206ENST00000430330 938 ntTSL 2 BASIC5.86□□□□□ -1.47
USP39Q53GS9 MTCO1P43-201ENST00000431831 488 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 FMO7P-201ENST00000436045 768 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 AC012075.1-201ENST00000436549 580 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC5.86□□□□□ -1.47
USP39Q53GS9 AL162739.1-201ENST00000450606 307 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 RPL23AP23-201ENST00000452590 471 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 MRPL35P4-201ENST00000453682 566 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 RNU7-125P-201ENST00000458760 62 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 COPS8P2-201ENST00000473228 627 ntBASIC5.86□□□□□ -1.47
USP39Q53GS9 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms