Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
SOX4Q06945 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SOX4Q06945 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.67□□□□□ -1.34
SOX4Q06945 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SOX4Q06945 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SOX4Q06945 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.67□□□□□ -1.34
SOX4Q06945 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC6.67□□□□□ -1.34
SOX4Q06945 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC6.67□□□□□ -1.34
SOX4Q06945 FUNDC2P3-201ENST00000334716 533 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 FAM32BP-201ENST00000344033 333 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
SOX4Q06945 Y_RNA.9-201ENST00000362354 101 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
SOX4Q06945 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC6.67□□□□□ -1.34
SOX4Q06945 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SOX4Q06945 RNU6-1009P-201ENST00000390996 107 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 RNU6-876P-201ENST00000391295 104 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
SOX4Q06945 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC6.67□□□□□ -1.34
SOX4Q06945 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.67□□□□□ -1.34
SOX4Q06945 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.67□□□□□ -1.34
SOX4Q06945 HSD17B7P1-201ENST00000412419 1017 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC6.67□□□□□ -1.34
SOX4Q06945 AL136231.1-201ENST00000429407 730 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 FAM96AP1-201ENST00000430879 482 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC6.67□□□□□ -1.34
SOX4Q06945 OR3D1P-201ENST00000438288 955 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC6.67□□□□□ -1.34
SOX4Q06945 RPL7P36-201ENST00000444633 681 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AL512593.1-201ENST00000444758 779 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
SOX4Q06945 RPL23AP35-201ENST00000451906 501 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC6.67□□□□□ -1.34
SOX4Q06945 RFC5P1-201ENST00000454419 874 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC6.67□□□□□ -1.34
SOX4Q06945 PNPLA4P1-201ENST00000458328 305 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AC104849.1-201ENST00000462623 405 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AC023194.2-201ENST00000465398 406 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AC079841.1-201ENST00000481228 950 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.67□□□□□ -1.34
SOX4Q06945 IGHV3-32-201ENST00000519182 355 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC6.67□□□□□ -1.34
SOX4Q06945 AP002453.2-201ENST00000533503 320 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.67□□□□□ -1.34
SOX4Q06945 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.67□□□□□ -1.34
SOX4Q06945 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.67□□□□□ -1.34
SOX4Q06945 MRPS21P9-201ENST00000571150 257 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AL138895.2-201ENST00000603019 178 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC6.67□□□□□ -1.34
SOX4Q06945 AC012557.1-201ENST00000607115 611 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AC015982.1-201ENST00000608113 465 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AC002553.4-201ENST00000616896 331 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AL136221.1-201ENST00000621449 509 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 AC022400.9-201ENST00000623633 273 ntBASIC6.67□□□□□ -1.34
SOX4Q06945 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC6.67□□□□□ -1.34
SOX4Q06945 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
SOX4Q06945 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
SOX4Q06945 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SOX4Q06945 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
SOX4Q06945 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
SOX4Q06945 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SOX4Q06945 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC6.66□□□□□ -1.34
SOX4Q06945 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
SOX4Q06945 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.66□□□□□ -1.34
SOX4Q06945 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
SOX4Q06945 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC6.66□□□□□ -1.34
SOX4Q06945 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
SOX4Q06945 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SOX4Q06945 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SOX4Q06945 RNU1-134P-201ENST00000362935 165 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 RNA5SP350-201ENST00000363298 111 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC6.66□□□□□ -1.34
SOX4Q06945 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
SOX4Q06945 LCN1P2-201ENST00000372030 223 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
SOX4Q06945 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC6.66□□□□□ -1.34
SOX4Q06945 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC6.66□□□□□ -1.34
SOX4Q06945 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC6.66□□□□□ -1.34
SOX4Q06945 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC6.66□□□□□ -1.34
SOX4Q06945 YWHAZP2-201ENST00000440317 728 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 ATP5LP2-201ENST00000440646 311 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 MTND3P22-201ENST00000510932 243 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.66□□□□□ -1.34
SOX4Q06945 TRIM77BP-201ENST00000524985 1119 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 FAU-203ENST00000525297 355 ntTSL 5 BASIC6.66□□□□□ -1.34
SOX4Q06945 NANOGNBP2-201ENST00000544753 553 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC6.66□□□□□ -1.34
SOX4Q06945 AL049870.4-201ENST00000555741 486 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.66□□□□□ -1.34
SOX4Q06945 MIR548AB-201ENST00000584917 84 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC6.66□□□□□ -1.34
SOX4Q06945 AL136097.3-201ENST00000611097 505 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 AC005962.2-201ENST00000611427 652 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 AL450226.2-201ENST00000622913 439 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 AP002505.2-201ENST00000623585 696 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
SOX4Q06945 AC073488.3-201ENST00000631611 778 ntBASIC6.66□□□□□ -1.34
SOX4Q06945 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC6.66□□□□□ -1.34
SOX4Q06945 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.66□□□□□ -1.34
SOX4Q06945 SLC9B1P1-201ENST00000331172 1337 ntBASIC6.66□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms