Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
PRKDCP78527 AC004014.2-201ENST00000623718 5122 ntBASIC3.19□□□□□ -1.9
PRKDCP78527 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC3.19□□□□□ -1.9
PRKDCP78527 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
PRKDCP78527 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC3.19□□□□□ -1.9
PRKDCP78527 OFD1P9Y-201ENST00000417699 1491 ntBASIC3.19□□□□□ -1.9
PRKDCP78527 RN7SKP185-201ENST00000362813 326 ntBASIC3.19□□□□□ -1.9
PRKDCP78527 RPL7P2-201ENST00000427639 268 ntBASIC3.19□□□□□ -1.9
PRKDCP78527 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC3.19□□□□□ -1.9
PRKDCP78527 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC3.19□□□□□ -1.9
PRKDCP78527 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC3.19□□□□□ -1.9
PRKDCP78527 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.19□□□□□ -1.9
PRKDCP78527 IFITM8P-201ENST00000522529 394 ntBASIC3.19□□□□□ -1.9
PRKDCP78527 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.19□□□□□ -1.9
PRKDCP78527 IGKV2D-19-201ENST00000523346 262 ntBASIC3.19□□□□□ -1.9
PRKDCP78527 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC3.19□□□□□ -1.9
PRKDCP78527 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC3.19□□□□□ -1.9
PRKDCP78527 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
PRKDCP78527 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.19□□□□□ -1.9
PRKDCP78527 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC3.19□□□□□ -1.9
PRKDCP78527 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
PRKDCP78527 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 NHS-204ENST00000615422 8860 ntTSL 5 BASIC3.18□□□□□ -1.9
PRKDCP78527 MUC3A-201ENST00000379458 11226 ntAPPRIS P2 TSL 5 BASIC3.18□□□□□ -1.9
PRKDCP78527 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
PRKDCP78527 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC3.18□□□□□ -1.9
PRKDCP78527 RPL7P9-201ENST00000468715 747 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC3.18□□□□□ -1.9
PRKDCP78527 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC3.18□□□□□ -1.9
PRKDCP78527 AC099522.1-202ENST00000514718 367 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC3.18□□□□□ -1.9
PRKDCP78527 OR5B10P-201ENST00000532869 642 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 AL049830.4-201ENST00000555149 351 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.18□□□□□ -1.9
PRKDCP78527 AL513477.2-201ENST00000607858 568 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.18□□□□□ -1.9
PRKDCP78527 AL137058.3-201ENST00000624531 3099 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 AC027228.2-201ENST00000567141 2154 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC3.18□□□□□ -1.9
PRKDCP78527 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 RNA5SP223-201ENST00000365174 120 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC3.18□□□□□ -1.9
PRKDCP78527 RN7SL323P-201ENST00000494712 295 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 AL034408.1-201ENST00000637712 664 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC3.18□□□□□ -1.9
PRKDCP78527 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
PRKDCP78527 EIF3EP2-201ENST00000423042 1814 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 TET1P1-201ENST00000426627 2301 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 DENND2C-201ENST00000393274 6163 ntTSL 5 BASIC3.18□□□□□ -1.9
PRKDCP78527 AC245052.5-201ENST00000416320 649 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 RPL7P33-201ENST00000444159 742 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.18□□□□□ -1.9
PRKDCP78527 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.18□□□□□ -1.9
PRKDCP78527 CREM-220ENST00000463314 964 ntTSL 2 BASIC3.18□□□□□ -1.9
PRKDCP78527 AP001486.1-201ENST00000463339 476 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 AP001804.1-201ENST00000526868 919 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC3.18□□□□□ -1.9
PRKDCP78527 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC3.18□□□□□ -1.9
PRKDCP78527 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.18□□□□□ -1.9
PRKDCP78527 AC018695.5-201ENST00000605872 315 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 AC107294.1-201ENST00000609524 467 ntBASIC3.18□□□□□ -1.9
PRKDCP78527 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
PRKDCP78527 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC3.18□□□□□ -1.9
PRKDCP78527 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
PRKDCP78527 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PRKDCP78527 AC016588.2-201ENST00000632484 3021 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.17□□□□□ -1.9
PRKDCP78527 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC3.17□□□□□ -1.9
PRKDCP78527 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PRKDCP78527 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.17□□□□□ -1.9
PRKDCP78527 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.17□□□□□ -1.9
PRKDCP78527 AC116553.2-201ENST00000564203 463 ntBASIC3.17□□□□□ -1.9
PRKDCP78527 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC3.17□□□□□ -1.9
PRKDCP78527 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 160.8 ms