Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC6.09□□□□□ -1.43
RNF4P78317 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC6.09□□□□□ -1.43
RNF4P78317 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 LINC00556-201ENST00000569603 412 ntBASIC6.09□□□□□ -1.43
RNF4P78317 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC6.09□□□□□ -1.43
RNF4P78317 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.09□□□□□ -1.43
RNF4P78317 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC6.09□□□□□ -1.43
RNF4P78317 AL121890.2-201ENST00000617644 465 ntBASIC6.09□□□□□ -1.43
RNF4P78317 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC6.09□□□□□ -1.43
RNF4P78317 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
RNF4P78317 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC6.09□□□□□ -1.43
RNF4P78317 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 CASC19-228ENST00000641414 1684 ntBASIC6.09□□□□□ -1.43
RNF4P78317 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
RNF4P78317 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.09□□□□□ -1.43
RNF4P78317 PARP4P1-201ENST00000435945 2337 ntBASIC6.09□□□□□ -1.43
RNF4P78317 SMG1P5-202ENST00000529428 4219 ntBASIC6.09□□□□□ -1.44
RNF4P78317 SMG1P2-201ENST00000566127 4221 ntBASIC6.09□□□□□ -1.44
RNF4P78317 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
RNF4P78317 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
RNF4P78317 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
RNF4P78317 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC6.09□□□□□ -1.44
RNF4P78317 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.08□□□□□ -1.44
RNF4P78317 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
RNF4P78317 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.08□□□□□ -1.44
RNF4P78317 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.08□□□□□ -1.44
RNF4P78317 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
RNF4P78317 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
RNF4P78317 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
RNF4P78317 ARHGAP42P1-201ENST00000507474 1976 ntBASIC6.08□□□□□ -1.44
RNF4P78317 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
RNF4P78317 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
RNF4P78317 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
RNF4P78317 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC6.08□□□□□ -1.44
RNF4P78317 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.08□□□□□ -1.44
RNF4P78317 SNORA40.3-201ENST00000390964 122 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AL133260.1-201ENST00000405720 405 ntBASIC6.08□□□□□ -1.44
RNF4P78317 NACAP7-201ENST00000407371 609 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC6.08□□□□□ -1.44
RNF4P78317 HMGB3P23-201ENST00000414981 585 ntBASIC6.08□□□□□ -1.44
RNF4P78317 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
RNF4P78317 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC6.08□□□□□ -1.44
RNF4P78317 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC6.08□□□□□ -1.44
RNF4P78317 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC6.08□□□□□ -1.44
RNF4P78317 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC6.08□□□□□ -1.44
RNF4P78317 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
RNF4P78317 AC098614.3-201ENST00000438957 440 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC6.08□□□□□ -1.44
RNF4P78317 AC245291.3-201ENST00000443400 292 ntBASIC6.08□□□□□ -1.44
RNF4P78317 MTATP6P30-201ENST00000443540 664 ntBASIC6.08□□□□□ -1.44
RNF4P78317 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.08□□□□□ -1.44
RNF4P78317 NPM1P39-201ENST00000449818 867 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AL139156.3-201ENST00000454802 394 ntBASIC6.08□□□□□ -1.44
RNF4P78317 RN7SL836P-201ENST00000476140 296 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AC117394.1-201ENST00000477323 567 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AC015724.1-201ENST00000478577 156 ntBASIC6.08□□□□□ -1.44
RNF4P78317 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC6.08□□□□□ -1.44
RNF4P78317 CR383656.1-201ENST00000484916 377 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AC093824.1-201ENST00000508796 343 ntBASIC6.08□□□□□ -1.44
RNF4P78317 ARL2BPP6-201ENST00000512757 439 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC6.08□□□□□ -1.44
RNF4P78317 FBXO16-208ENST00000519471 398 ntTSL 2 BASIC6.08□□□□□ -1.44
RNF4P78317 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC6.08□□□□□ -1.44
RNF4P78317 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.08□□□□□ -1.44
RNF4P78317 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC6.08□□□□□ -1.44
RNF4P78317 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC6.08□□□□□ -1.44
RNF4P78317 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC6.08□□□□□ -1.44
RNF4P78317 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC6.08□□□□□ -1.44
RNF4P78317 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC6.08□□□□□ -1.44
RNF4P78317 AC022884.3-201ENST00000579571 248 ntBASIC6.08□□□□□ -1.44
RNF4P78317 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC6.08□□□□□ -1.44
RNF4P78317 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC6.08□□□□□ -1.44
RNF4P78317 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC6.08□□□□□ -1.44
RNF4P78317 XIST-210ENST00000602863 775 ntTSL 3 BASIC6.08□□□□□ -1.44
RNF4P78317 AL596327.1-201ENST00000603629 213 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AL359704.2-201ENST00000604335 521 ntBASIC6.08□□□□□ -1.44
RNF4P78317 CYCSP1-201ENST00000604815 315 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AC055764.2-201ENST00000610089 670 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AL589743.6-201ENST00000611025 117 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AC091304.9-201ENST00000612091 226 ntBASIC6.08□□□□□ -1.44
RNF4P78317 IGKV2OR2-10-201ENST00000613976 311 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AL445647.2-201ENST00000615170 130 ntBASIC6.08□□□□□ -1.44
RNF4P78317 AC063943.3-201ENST00000615562 356 ntBASIC6.08□□□□□ -1.44
RNF4P78317 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
RNF4P78317 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
RNF4P78317 AL031985.3-201ENST00000565390 2449 ntBASIC6.08□□□□□ -1.44
RNF4P78317 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.08□□□□□ -1.44
RNF4P78317 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
RNF4P78317 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
RNF4P78317 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
RNF4P78317 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.08□□□□□ -1.44
RNF4P78317 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.07□□□□□ -1.44
RNF4P78317 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms