Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 Z80107.2-201ENST00000445127 392 ntBASIC4.54□□□□□ -1.68
SDC1P18827 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.54□□□□□ -1.68
SDC1P18827 AP000942.1-201ENST00000463969 747 ntBASIC4.54□□□□□ -1.68
SDC1P18827 AC117394.1-201ENST00000477323 567 ntBASIC4.54□□□□□ -1.68
SDC1P18827 RPL23AP37-201ENST00000479658 549 ntBASIC4.54□□□□□ -1.68
SDC1P18827 RPS4XP18-201ENST00000495480 763 ntBASIC4.54□□□□□ -1.68
SDC1P18827 BTG4P1-201ENST00000510421 183 ntBASIC4.54□□□□□ -1.68
SDC1P18827 RNA5SP34-201ENST00000516887 130 ntBASIC4.54□□□□□ -1.68
SDC1P18827 MORF4L1P3-201ENST00000525966 950 ntBASIC4.54□□□□□ -1.68
SDC1P18827 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.54□□□□□ -1.68
SDC1P18827 HAUS8P1-201ENST00000549005 542 ntBASIC4.54□□□□□ -1.68
SDC1P18827 MIR5699-201ENST00000578903 90 ntBASIC4.54□□□□□ -1.68
SDC1P18827 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.54□□□□□ -1.68
SDC1P18827 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC4.54□□□□□ -1.68
SDC1P18827 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC4.54□□□□□ -1.68
SDC1P18827 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SDC1P18827 AC130352.1-201ENST00000602979 661 ntBASIC4.54□□□□□ -1.68
SDC1P18827 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.54□□□□□ -1.68
SDC1P18827 AC239803.2-201ENST00000610161 430 ntBASIC4.54□□□□□ -1.68
SDC1P18827 AL121612.2-201ENST00000612261 482 ntBASIC4.54□□□□□ -1.68
SDC1P18827 AL158062.1-201ENST00000619632 745 ntBASIC4.54□□□□□ -1.68
SDC1P18827 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC4.54□□□□□ -1.68
SDC1P18827 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.54□□□□□ -1.68
SDC1P18827 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.54□□□□□ -1.68
SDC1P18827 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.54□□□□□ -1.68
SDC1P18827 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SDC1P18827 MTCO1P11-201ENST00000429111 1528 ntBASIC4.54□□□□□ -1.68
SDC1P18827 MTCO1P15-201ENST00000529569 1526 ntBASIC4.54□□□□□ -1.68
SDC1P18827 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SDC1P18827 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.54□□□□□ -1.68
SDC1P18827 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.54□□□□□ -1.68
SDC1P18827 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.54□□□□□ -1.68
SDC1P18827 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.54□□□□□ -1.68
SDC1P18827 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SDC1P18827 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SDC1P18827 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SDC1P18827 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SDC1P18827 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SDC1P18827 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SDC1P18827 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.53□□□□□ -1.68
SDC1P18827 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.53□□□□□ -1.68
SDC1P18827 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
SDC1P18827 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SDC1P18827 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.53□□□□□ -1.68
SDC1P18827 OR5T3-201ENST00000303059 1023 ntBASIC4.53□□□□□ -1.68
SDC1P18827 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
SDC1P18827 SNORD96B-201ENST00000386148 79 ntBASIC4.53□□□□□ -1.68
SDC1P18827 MIR765-201ENST00000390226 114 ntBASIC4.53□□□□□ -1.68
SDC1P18827 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SDC1P18827 SNORA11.3-201ENST00000408471 128 ntBASIC4.53□□□□□ -1.68
SDC1P18827 AC114755.2-201ENST00000413520 361 ntBASIC4.53□□□□□ -1.68
SDC1P18827 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SDC1P18827 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.53□□□□□ -1.68
SDC1P18827 CHEK2P3-201ENST00000416118 248 ntBASIC4.53□□□□□ -1.68
SDC1P18827 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.53□□□□□ -1.68
SDC1P18827 AC092447.2-201ENST00000435487 669 ntBASIC4.53□□□□□ -1.68
SDC1P18827 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.53□□□□□ -1.68
SDC1P18827 AC073850.1-201ENST00000449243 255 ntBASIC4.53□□□□□ -1.68
SDC1P18827 RBMY2TP-201ENST00000451162 947 ntBASIC4.53□□□□□ -1.68
SDC1P18827 AC234781.3-201ENST00000452540 973 ntBASIC4.53□□□□□ -1.68
SDC1P18827 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.53□□□□□ -1.68
SDC1P18827 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.53□□□□□ -1.68
SDC1P18827 RNA5SP464-201ENST00000516251 108 ntBASIC4.53□□□□□ -1.68
SDC1P18827 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.53□□□□□ -1.68
SDC1P18827 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
SDC1P18827 BUD31P1-201ENST00000521828 359 ntBASIC4.53□□□□□ -1.68
SDC1P18827 AC026616.1-201ENST00000523157 525 ntBASIC4.53□□□□□ -1.68
SDC1P18827 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.53□□□□□ -1.68
SDC1P18827 GCSHP4-201ENST00000538792 439 ntBASIC4.53□□□□□ -1.68
SDC1P18827 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC4.53□□□□□ -1.68
SDC1P18827 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.53□□□□□ -1.68
SDC1P18827 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.53□□□□□ -1.68
SDC1P18827 DUX4L52-201ENST00000549363 777 ntBASIC4.53□□□□□ -1.68
SDC1P18827 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC4.53□□□□□ -1.68
SDC1P18827 FAM106CP-201ENST00000582212 507 ntBASIC4.53□□□□□ -1.68
SDC1P18827 AC022726.1-201ENST00000587475 207 ntBASIC4.53□□□□□ -1.68
SDC1P18827 COX6CP4-201ENST00000605798 228 ntBASIC4.53□□□□□ -1.68
SDC1P18827 SNORD91B-202ENST00000608459 222 ntBASIC4.53□□□□□ -1.68
SDC1P18827 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC4.53□□□□□ -1.68
SDC1P18827 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SDC1P18827 MIR6826-201ENST00000617808 98 ntBASIC4.53□□□□□ -1.68
SDC1P18827 SNORA11.6-201ENST00000619030 128 ntBASIC4.53□□□□□ -1.68
SDC1P18827 AL359757.1-201ENST00000623176 255 ntBASIC4.53□□□□□ -1.68
SDC1P18827 AC020763.5-201ENST00000623298 430 ntBASIC4.53□□□□□ -1.68
SDC1P18827 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SDC1P18827 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.53□□□□□ -1.68
SDC1P18827 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
SDC1P18827 OR51C1P-202ENST00000641159 1444 ntBASIC4.53□□□□□ -1.68
SDC1P18827 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.53□□□□□ -1.68
SDC1P18827 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SDC1P18827 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
SDC1P18827 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
SDC1P18827 AC083843.3-201ENST00000623679 2186 ntBASIC4.53□□□□□ -1.68
SDC1P18827 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.53□□□□□ -1.69
SDC1P18827 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.69
SDC1P18827 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.53□□□□□ -1.69
SDC1P18827 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.53□□□□□ -1.69
SDC1P18827 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SDC1P18827 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
SDC1P18827 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms