Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
HOXD4P09016 RNU6-819P-201ENST00000364116 107 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 RNA5SP87-201ENST00000384155 118 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
HOXD4P09016 RPS4XP9-201ENST00000405151 780 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.62□□□□□ -1.67
HOXD4P09016 RAB28P1-201ENST00000411517 641 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 COX6B1P1-201ENST00000415962 213 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 PRPF38AP2-201ENST00000438179 851 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 AL450263.2-201ENST00000439400 589 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 MTCO3P43-201ENST00000440974 771 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXD4P09016 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXD4P09016 RN7SL738P-201ENST00000470264 297 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 RN7SL205P-201ENST00000490174 284 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
HOXD4P09016 COX6B1P5-201ENST00000509843 249 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 RN7SKP34-201ENST00000516142 244 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 SNORA70.17-201ENST00000516449 133 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 RNU6-467P-201ENST00000517027 110 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXD4P09016 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXD4P09016 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXD4P09016 AC006518.1-201ENST00000541449 943 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXD4P09016 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXD4P09016 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXD4P09016 ADAD1P2-201ENST00000588476 646 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXD4P09016 AC008814.1-201ENST00000603797 406 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 RN7SL722P-201ENST00000617780 284 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 RN7SL565P-201ENST00000618246 284 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.62□□□□□ -1.67
HOXD4P09016 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
HOXD4P09016 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXD4P09016 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXD4P09016 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXD4P09016 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXD4P09016 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXD4P09016 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.62□□□□□ -1.67
HOXD4P09016 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXD4P09016 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXD4P09016 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXD4P09016 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXD4P09016 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXD4P09016 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXD4P09016 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXD4P09016 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXD4P09016 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXD4P09016 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXD4P09016 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXD4P09016 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.61□□□□□ -1.67
HOXD4P09016 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
HOXD4P09016 RN7SKP149-201ENST00000363008 344 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 RNU6-697P-201ENST00000363348 107 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXD4P09016 MIR192-201ENST00000384915 110 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 MIR137-201ENST00000385223 102 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 AC013442.1-201ENST00000397347 228 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 AP002530.1-201ENST00000405705 684 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 RN7SKP114-201ENST00000410327 279 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 RNU6-564P-201ENST00000410983 104 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 AC004690.1-201ENST00000418216 328 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 RPL36AP10-201ENST00000421785 322 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 EI24P4-201ENST00000423683 1078 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXD4P09016 MTCO1P51-201ENST00000427672 1060 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXD4P09016 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXD4P09016 AC090018.1-201ENST00000434369 367 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXD4P09016 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXD4P09016 RPS29P33-201ENST00000456717 146 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXD4P09016 AC100784.1-201ENST00000522790 310 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXD4P09016 AC008033.2-201ENST00000542626 177 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 DUX4L52-201ENST00000549363 777 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXD4P09016 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXD4P09016 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXD4P09016 AC079075.1-201ENST00000559543 878 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXD4P09016 AC067838.1-201ENST00000606064 577 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 AL008729.2-201ENST00000606393 473 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXD4P09016 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXD4P09016 uc_338.18-201ENST00000615451 175 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 AC020978.9-201ENST00000624380 1141 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXD4P09016 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXD4P09016 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXD4P09016 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
HOXD4P09016 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXD4P09016 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXD4P09016 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXD4P09016 AC026951.1-201ENST00000559530 2459 ntBASIC4.61□□□□□ -1.67
HOXD4P09016 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXD4P09016 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms