Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RPS3AP23-201ENST00000401762 784 ntBASIC6.22□□□□□ -1.41
COL3A1P02461 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC6.22□□□□□ -1.41
COL3A1P02461 RNF2P1-201ENST00000442955 1010 ntBASIC6.22□□□□□ -1.41
COL3A1P02461 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC6.22□□□□□ -1.41
COL3A1P02461 AC104651.2-201ENST00000447549 528 ntBASIC6.22□□□□□ -1.41
COL3A1P02461 AC069277.2-201ENST00000454211 432 ntBASIC6.22□□□□□ -1.41
COL3A1P02461 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC6.22□□□□□ -1.41
COL3A1P02461 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC6.22□□□□□ -1.41
COL3A1P02461 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC6.22□□□□□ -1.41
COL3A1P02461 OR8X1P-201ENST00000534542 869 ntBASIC6.22□□□□□ -1.41
COL3A1P02461 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC6.22□□□□□ -1.41
COL3A1P02461 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL3A1P02461 AC005412.1-201ENST00000580812 1049 ntBASIC6.22□□□□□ -1.41
COL3A1P02461 RPL12P25-202ENST00000598100 674 ntBASIC6.22□□□□□ -1.41
COL3A1P02461 AC090181.2-201ENST00000602975 672 ntBASIC6.22□□□□□ -1.41
COL3A1P02461 AC096947.1-201ENST00000603233 470 ntBASIC6.22□□□□□ -1.41
COL3A1P02461 AL133338.2-201ENST00000604292 736 ntBASIC6.22□□□□□ -1.41
COL3A1P02461 MIR7641-1-201ENST00000627518 61 ntBASIC6.22□□□□□ -1.41
COL3A1P02461 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL3A1P02461 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.41
COL3A1P02461 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
COL3A1P02461 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC6.21□□□□□ -1.41
COL3A1P02461 AL355578.1-201ENST00000607405 1328 ntBASIC6.21□□□□□ -1.41
COL3A1P02461 MTND5P31-201ENST00000419366 1374 ntBASIC6.21□□□□□ -1.42
COL3A1P02461 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL3A1P02461 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.21□□□□□ -1.42
COL3A1P02461 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL3A1P02461 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL3A1P02461 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL3A1P02461 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL3A1P02461 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL3A1P02461 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
COL3A1P02461 HSPA8P19-201ENST00000505359 1517 ntBASIC6.21□□□□□ -1.42
COL3A1P02461 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL3A1P02461 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC6.21□□□□□ -1.42
COL3A1P02461 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC6.21□□□□□ -1.42
COL3A1P02461 MIR298-201ENST00000401212 88 ntBASIC6.21□□□□□ -1.42
COL3A1P02461 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC6.21□□□□□ -1.42
COL3A1P02461 MTND4P15-201ENST00000437913 1033 ntBASIC6.21□□□□□ -1.42
COL3A1P02461 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC6.21□□□□□ -1.42
COL3A1P02461 NDUFA12P1-201ENST00000455914 406 ntBASIC6.21□□□□□ -1.42
COL3A1P02461 SCARNA10-201ENST00000459255 330 ntBASIC6.21□□□□□ -1.42
COL3A1P02461 AC006463.2-201ENST00000473326 348 ntBASIC6.21□□□□□ -1.42
COL3A1P02461 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC6.21□□□□□ -1.42
COL3A1P02461 AC087360.1-201ENST00000518788 616 ntBASIC6.21□□□□□ -1.42
COL3A1P02461 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
COL3A1P02461 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC6.21□□□□□ -1.42
COL3A1P02461 RN7SL652P-201ENST00000577769 300 ntBASIC6.21□□□□□ -1.42
COL3A1P02461 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC6.21□□□□□ -1.42
COL3A1P02461 BNIP3P38-201ENST00000601117 544 ntBASIC6.21□□□□□ -1.42
COL3A1P02461 OR7A19P-201ENST00000608051 733 ntBASIC6.21□□□□□ -1.42
COL3A1P02461 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC6.21□□□□□ -1.42
COL3A1P02461 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL3A1P02461 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC6.21□□□□□ -1.42
COL3A1P02461 AL137100.1-201ENST00000556703 1620 ntBASIC6.21□□□□□ -1.42
COL3A1P02461 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC6.2□□□□□ -1.42
COL3A1P02461 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL3A1P02461 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL3A1P02461 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL3A1P02461 AL592494.2-201ENST00000425455 1548 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC6.2□□□□□ -1.42
COL3A1P02461 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
COL3A1P02461 AL445487.1-201ENST00000415694 1580 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC6.2□□□□□ -1.42
COL3A1P02461 RPS16P5-201ENST00000406501 404 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 CASKP1-201ENST00000412870 582 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 Z80107.1-201ENST00000436830 412 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC6.2□□□□□ -1.42
COL3A1P02461 FCF1P6-201ENST00000456841 595 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 AC090142.1-201ENST00000465776 462 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 AC104629.2-201ENST00000468627 598 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 AC093720.1-201ENST00000505681 714 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 AC008628.1-201ENST00000508663 265 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC6.2□□□□□ -1.42
COL3A1P02461 MTND5P21-201ENST00000531961 522 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC6.2□□□□□ -1.42
COL3A1P02461 AL121594.4-201ENST00000556211 1196 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 MTND2P13-201ENST00000577438 1039 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 AC245128.3-201ENST00000594721 748 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL3A1P02461 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL3A1P02461 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC6.2□□□□□ -1.42
COL3A1P02461 ACTR3BP2-202ENST00000623630 1338 ntBASIC6.2□□□□□ -1.42
COL3A1P02461 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC6.2□□□□□ -1.42
COL3A1P02461 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC6.2□□□□□ -1.42
COL3A1P02461 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC6.2□□□□□ -1.42
COL3A1P02461 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL3A1P02461 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL3A1P02461 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
COL3A1P02461 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC6.19□□□□□ -1.42
COL3A1P02461 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC6.19□□□□□ -1.42
COL3A1P02461 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.19□□□□□ -1.42
COL3A1P02461 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
COL3A1P02461 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL3A1P02461 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL3A1P02461 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL3A1P02461 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL3A1P02461 MTND4P13-201ENST00000402078 1023 ntBASIC6.19□□□□□ -1.42
COL3A1P02461 RPS4XP9-201ENST00000405151 780 ntBASIC6.19□□□□□ -1.42
COL3A1P02461 LUZP4P1-201ENST00000415420 344 ntBASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms