Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AL929601.4-201ENST00000613011 1341 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AL117378.2-201ENST00000622916 1337 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 RN7SL290P-201ENST00000578661 300 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 BPIFA4P-203ENST00000603168 689 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 MIR7151-201ENST00000617477 60 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 RNA5SP432-201ENST00000362480 116 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 ATP5F1P4-201ENST00000397288 746 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AC116553.2-201ENST00000564203 463 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 MIR3653-201ENST00000625572 110 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AC007998.4-201ENST00000612496 2533 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 MAPK6PS2-201ENST00000379571 2060 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AC009951.1-201ENST00000623674 2614 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 MFSD13B-201ENST00000420133 1290 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 RPL23AP94-201ENST00000512518 302 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 IPO5P1-202ENST00000600039 287 ntBASIC4.39□□□□□ -1.71
VPS13AQ96RL7 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
VPS13AQ96RL7 AP001002.1-201ENST00000625148 1513 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 METTL14-201ENST00000388822 6669 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 RNA5SP72-201ENST00000364442 117 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 SNORA73.2-201ENST00000364946 201 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 AL450992.3-201ENST00000413192 568 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 SYF2P2-201ENST00000417620 583 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 AC010460.1-201ENST00000507087 466 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 AC020634.1-201ENST00000608701 549 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 PCAT14-202ENST00000627127 3935 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 RN7SKP235-201ENST00000410662 305 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 AC090018.1-201ENST00000434369 367 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 AC104978.1-201ENST00000449387 391 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 RN7SKP248-201ENST00000516278 305 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 RPL21P12-201ENST00000559810 515 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 AC093249.4-201ENST00000564755 259 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 AC005412.1-201ENST00000580812 1049 ntBASIC4.38□□□□□ -1.71
VPS13AQ96RL7 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS13AQ96RL7 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms