Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC234779.1-201ENST00000425910 285 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC002486.1-201ENST00000435098 391 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC092013.1-201ENST00000438795 332 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 RPL10P17-201ENST00000453852 316 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 C1DP4-201ENST00000455429 424 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 TRBV26-201ENST00000456572 344 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 CBX5P1-201ENST00000468470 561 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 PABPC1P3-201ENST00000469174 459 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC087879.1-201ENST00000474343 374 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC007182.2-201ENST00000489251 402 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 OR5M14P-201ENST00000506803 618 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC093325.1-201ENST00000508378 326 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC114781.4-201ENST00000513707 639 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 RPS27AP18-201ENST00000515536 459 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 RNU6-507P-201ENST00000516045 100 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 Y_RNA.672-201ENST00000516289 104 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 IGLVV-66-201ENST00000523818 341 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC107952.1-201ENST00000524200 376 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AP001994.1-201ENST00000527539 826 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AP001646.1-201ENST00000527936 915 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 HNRNPCP8-201ENST00000528764 888 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC103855.4-201ENST00000533158 265 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC090424.1-201ENST00000535243 736 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 FXNP1-201ENST00000555153 337 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 LINC01146-203ENST00000555996 459 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC015914.1-201ENST00000558050 1072 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 HMGB1P33-201ENST00000563485 527 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 MIR5010-201ENST00000582846 120 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 IGLJCOR18-201ENST00000584002 424 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC087575.1-201ENST00000585087 229 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 NRBF2P1-201ENST00000587407 859 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC245014.2-201ENST00000603689 287 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AL139286.1-201ENST00000604465 483 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 MEMO1P5-201ENST00000604810 406 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC246785.4-201ENST00000605374 287 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 RNU6-87P-201ENST00000607561 108 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC010333.3-201ENST00000615100 402 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 RNU6-156P-201ENST00000621869 107 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 DUXAP9-208ENST00000622815 614 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC091905.1-201ENST00000624400 311 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AP003400.3-201ENST00000624904 346 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 ZNF761-202ENST00000432094 4061 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC129502.1-201ENST00000623261 1654 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AL021877.2-201ENST00000624442 10684 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AGXT2-201ENST00000231420 2364 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 Y_RNA.46-201ENST00000362695 102 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 RNU6-853P-201ENST00000364306 107 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 RNU6-343P-201ENST00000364709 104 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 Y_RNA.295-201ENST00000364918 102 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 RNU6-744P-201ENST00000365557 107 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 SPRR2D-202ENST00000368756 788 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 RNU6-1316P-201ENST00000384242 108 ntBASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms