Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SRRM1P2-201ENST00000464531 1192 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 RPS23P6-201ENST00000466136 431 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 RPL23AP40-201ENST00000487630 390 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 RN7SL30P-201ENST00000488416 306 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC5.89□□□□□ -1.47
USP39Q53GS9 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC5.89□□□□□ -1.47
USP39Q53GS9 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.89□□□□□ -1.47
USP39Q53GS9 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.89□□□□□ -1.47
USP39Q53GS9 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.89□□□□□ -1.47
USP39Q53GS9 AC004825.1-201ENST00000555068 586 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC5.89□□□□□ -1.47
USP39Q53GS9 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC5.89□□□□□ -1.47
USP39Q53GS9 MIR132-201ENST00000591554 101 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.89□□□□□ -1.47
USP39Q53GS9 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 U6.42-201ENST00000618440 107 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 RNU6-368P-201ENST00000620928 107 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 RNU6-538P-201ENST00000622329 107 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 AL160394.1-201ENST00000624765 724 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 GMFB-210ENST00000628554 639 ntTSL 4 BASIC5.89□□□□□ -1.47
USP39Q53GS9 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 SAMMSON-227ENST00000642114 1199 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
USP39Q53GS9 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
USP39Q53GS9 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.88□□□□□ -1.47
USP39Q53GS9 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.88□□□□□ -1.47
USP39Q53GS9 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
USP39Q53GS9 RNU4-92P-201ENST00000363783 136 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 HSPD1P16-201ENST00000402302 394 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 FCF1P5-201ENST00000406490 482 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC5.88□□□□□ -1.47
USP39Q53GS9 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC5.88□□□□□ -1.47
USP39Q53GS9 AL445183.3-201ENST00000414168 502 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.88□□□□□ -1.47
USP39Q53GS9 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 P2RY10P2-201ENST00000416730 913 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC5.88□□□□□ -1.47
USP39Q53GS9 AC234781.4-201ENST00000419384 244 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
USP39Q53GS9 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.88□□□□□ -1.47
USP39Q53GS9 OR5W1P-201ENST00000423705 938 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 RPF2P1-201ENST00000424137 906 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.88□□□□□ -1.47
USP39Q53GS9 FTLP19-201ENST00000433300 394 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 AC098826.1-201ENST00000433943 471 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC5.88□□□□□ -1.47
USP39Q53GS9 AC092393.1-201ENST00000439625 742 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.88□□□□□ -1.47
USP39Q53GS9 AC104978.1-201ENST00000449387 391 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 AC009961.3-201ENST00000449832 765 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 OSTCP1-201ENST00000455507 450 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 AC093166.4-201ENST00000457867 318 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 AC093899.1-201ENST00000457984 376 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 RN7SL72P-201ENST00000460697 269 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 RPL6P9-201ENST00000466502 859 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
USP39Q53GS9 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
USP39Q53GS9 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
USP39Q53GS9 AC021146.8-201ENST00000507455 733 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
USP39Q53GS9 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC5.88□□□□□ -1.47
USP39Q53GS9 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.88□□□□□ -1.47
USP39Q53GS9 RNU6-943P-201ENST00000516960 98 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 SEC11B-201ENST00000518383 499 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.88□□□□□ -1.47
USP39Q53GS9 TPM3P3-201ENST00000521343 354 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.88□□□□□ -1.47
USP39Q53GS9 AC004923.2-201ENST00000529649 369 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.88□□□□□ -1.47
USP39Q53GS9 PCNPP1-201ENST00000552501 511 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC5.88□□□□□ -1.47
USP39Q53GS9 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.88□□□□□ -1.47
USP39Q53GS9 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.88□□□□□ -1.47
USP39Q53GS9 AC104229.1-201ENST00000561364 255 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 AL354943.1-201ENST00000572103 781 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC5.88□□□□□ -1.47
USP39Q53GS9 AL590229.1-201ENST00000603497 542 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.88□□□□□ -1.47
USP39Q53GS9 AL031775.1-201ENST00000607014 887 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 MIR6798-201ENST00000612887 67 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 AC090617.9-201ENST00000623751 147 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 AL359740.1-201ENST00000624340 592 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.88□□□□□ -1.47
USP39Q53GS9 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
USP39Q53GS9 AL049737.1-201ENST00000413920 1403 ntBASIC5.88□□□□□ -1.47
USP39Q53GS9 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms